RnoINT0092527 @ rn6
Intron Retention
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8934857-8936368:+
Coord C1 exon
chr3:8934857-8935067
Coord A exon
chr3:8935068-8936255
Coord C2 exon
chr3:8936256-8936368
Length
1188 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ACCCACCCTTCTCCTCACAGGCT
3' ss Score
10.85
Exon sequences
Seq C1 exon
TCTGCGTTCTCCCAACTGCGGTTGACCCCAGGCCTGAGAAAGGTTCTTTTTGCCACGGCCCTCGGGACTGTGGCCTTGGCCCTGGCTGCCCACCAGCTGAAAAGGCGCCGTCGGAAGAAGAAACAGGTGGGCCCCGAGATGGGAAGTGAGCAGCTGGGCACCTTCCCCATGCCCATCCTCATGGCCCGCAAGGTCCCTTCGGTGAAGAAAG
Seq A exon
GTAGGTGTGTGGTTGGGGAGCCTCTGACGTTTGTCACATCTTAGCACTGTTCACTGTGGGTCTCAGGCTTGTGCCTTCCCACCTCATAGCCAAGTTACCTCAGTAGAGTTGACCGCAGAACCATTCCTGGAGACAATGGGCTCAGGTGTGGTGGGTGACATTGGTCCCGGTGGCTATATCACTGTAGAAAATTTCCCTGTGCTCAGGAATAAAGACATGAACCCAATGGTATTTCTCCATTCTCCTCTAGGGGGTAGAAAAGGGATTTGCATGTGGTAAGGGTCACCTTTTTACTGTTTCCAGAACTTTGAGACAGGGCCATCGTAGAACCAAGCCACTGCGGGAAAACTTTATAAATAATTTATCTCAGAGTTGGCGTGTGAGCAAAGGTGTGTGGATGTGCCGTAGGGTACTTTTGGAGGGAGGTCAGAGGACAACTTAAATACGTAAGTTCTCTCCTTCCTCCACATGTGGGTTCCGGGGTCAAACGGAGGCCGGGGCTCATCTTGCCAGCCCTAGAAAACTCCTTCCCTGGGAGTCAGTTGTTTGCTACAGGTTGGTGTTACATTGCTCTCCTTCAAGGCGAAGCATTCTCATAGGTTCCCAACTGGGGAAAAACAAGTTTCTTTGGAAAATCAGTTTTCAAAGCGAGGTGTGATCGTCGCCTGTAGCCCTAGCGCCTGGGAACACGAGGCAGATGTAGAACTTACGGCCAGGAGAATGAGGCTTAAGGGTTTGTTGATCTGTTTATCTATTGTACGTACCATGCTGTGGTGTACATGAGGTGCTCGGAGGACCTCTCTGATTCACTCCGAGTTGGGTGTCTCCTTCCATCAAGGACTGAGCTCAGGCCTTTCGGCCTGGTAGCAAGTACCCTTACCTGCTGAGGCATCTGGAAAAGAGAATTCTTTATCAGACACTCAATCAAGCACACAGGCAAACTGAGTAAGAGGTAGGGAGGTGACCCGCCTTGCTCTCAGCTTATCCTGGCATTTGGGGCCTTCCTGTGGGCCTGGCCCTGTTTTAAGTCAGCAGGCCAAGGAAGAGCCTTAGTCCTCTGCTAAGTATACTCACCCAGAGGGATCCACTGATGTCCTGGCTTAGGTCAGGACACACTTCCAGAAAGAGAAGGCTGGGGAGGGCAGTTCAGTGGGAGGATGCAGGTGAGACCCACCCTTCTCCTCACAG
Seq C2 exon
GCTGCTCCAGCCGGAGGGTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTGAGTGGTATCTCCTCCATAGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513:ENSRNOT00000065300:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(15.3=100)
A:
NA
C2:
PF102654=DUF2217=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTTCTCCCAACTGCG
R:
CCAGGCTGTGGGAGGAGC
Band lengths:
318-1506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]