MmuINT0062069 @ mm9
Intron Retention
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30224397-30225927:+
Coord C1 exon
chr2:30224397-30224607
Coord A exon
chr2:30224608-30225814
Coord C2 exon
chr2:30225815-30225927
Length
1207 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ACCCACCCTTCTCCTCACAGGCT
3' ss Score
10.85
Exon sequences
Seq C1 exon
TCCGCGTTCTCCCAGCTGCGGTTGACACCGGGCCTGAGGAAGGTTCTTTTTGCCACAGCCCTTGGGACTGTGGCCTTGGCCCTGGCTGCCCACCAGCTGAAAAGGCGCCGGCGGAAGAAGAAGCAGGTGGGCCCTGAGATGGGAGGTGAGCAGCTGGGCACGGTGCCCATGCCCATCCTCATGGCCCGCAAGGTCCCTTCGGTGAAGAAAG
Seq A exon
GTAGGTATGTGGTTGGGGAGCCTCTGGCATCTGAGTCACTTCTCAGCAGCATTCGCTGTGGGTCTCAGGCTCGTGCCTTCCCACCTCACAGCTAAGTTACCCTCAGTAGACAGCAGAACAGACACTGGGCTCAGGTGTGGTGCGCGGCGTTGGTCCTGGGTGTCCTTCTTACTGTAGGGAATTTCCCCAAGCTCAGGAATAAAGATGCGGAGCTCGTGAACACACTGGTGTGGTGTGTCTCTGTTCTCCTCTTAAATGGGAGAGGAGGGATTTGGGTGTGGTAAGATTCGCCTTTTTAGTGTGTCCGGAACATTGAGACAGTGCCATCACAGAACTGAGCCACTGTGGGAAAACTTTGAAAAAGTTGATCTTGGAGTTTGTGTGAGAGCAAAGGTGTGTGGGTGTGCCGTAGTACACTGTGGAGGTCAGAGGGCAACTTGCATGTGTAAGTTCTTGCCTCTTTCACTTGTGGGTTCTGGGGTCATGCTGAGGCCTGGGCTCATCTTGCCGGCCCTCGTGAGACCCAGTTGTTTGCTACTGGTCACTGTCACGTTGCTCTCCTTCAAAGCAAGGCGCTCTCATAGGTTCACAACTTGGGAAAAACAAGTTTCCTTGGAAAATAAATGTTTAAAGCCAGGTGTGATACTGTGTGCCCGTAATCCTAGCACTTGGGAAGATGGGGCAGGTGTAGAACTTAAGGCCACTGTGGGCTACACACTGAGACTTTGTCTCAAAAAACCAAAACTAATTAAGGAGAATGAGGTTTACGGACTGTTTTATCTATTTATTGTACGCTCTGCGCCATGGTGTACGTGAGGTGATCAGAGGGCCTCTCTGATTCACCGGGAATTGGGTCTCTCCTTCATTGAGGATTGAACCCAGGTCCTTCGGCCTGGTAGCAAGTTCCCTTACCTGCTGAAGCATCTGTAAAAGAACGTTCTTTATCAATCACTCAGGCAAACTGAGTAAGAGGTAGGGAGGTGACCCGCCTTGCTCTCAGCCTGTCCCAGCGTTTGGGGCCCTCCTATGGGCCTGGCCTTGTGTTAAGCCAGCAGGCAAAGGAAAAGCCTTAGTCCTCTGTTAAGTGTACACACTCAGAGGAATCCACTGGTGTCCTGGCTTAGGTCAGGACACTCTTCCCGAAAGATAAGGATGGGAGGGAGGCTCCGTGGGAGGATGAATGTGAGACCCACCCTTCTCCTCACAG
Seq C2 exon
GCTGCTCCAGCAGGAGGGTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTTAGTGGCATCTCCTCCATCGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-Fam73b:NM_175392:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=NA C2=0.992
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(13.0=100)
A:
NA
C2:
PF102654=DUF2217=PD(32.7=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCGTTCTCCCAGCTG
R:
CCAGGCTGTGGGAGGAGC
Band lengths:
319-1526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: