GgaINT1012986 @ galGal4
Intron Retention
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5460774-5462219:+
Coord C1 exon
chr17:5460774-5460984
Coord A exon
chr17:5460985-5462106
Coord C2 exon
chr17:5462107-5462219
Length
1122 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
3' ss Seq
TTGTGTGACCTCAACTTCAGGAT
3' ss Score
7.81
Exon sequences
Seq C1 exon
TCTGTCTTCTCTCAGCTGCGGCTCTCTGCAGGCCTACGTAAGGTACTGTTTGCTACAGCTCTTGGGACGGTTGCGTTGGCTCTTGCAGCTCATCAGCTGAAGCGTCGTCGTCGCCGAAAGAAGCAGATTGCTCCAGAGAAGTGTGGCTTTAAGCCTGGAGGCGTCACAGTGCCCATCCTGCCAACCAGAAGGGTCTCTTCTGTGAAGAAAG
Seq A exon
GTTGGCCTTGCAATAAAGGGGAGTCCCCAAAACCATGTAGCGTGGGGATGAATATTGCTAAAATAGCGTTCAAAGAAAGGGGGTGTACGAGCAGCAGTGGGACCATGGAATGTTCCTGGCAAGTGGGCGGAGAGGAAAGAAAAGTGATTTCTGTGCACTACATTGATGTAGAATGGAATTAAAGATCTGAAGCACAGTGCTATGAACACAGGGTTAGTGCAGGAAAGGGGGAGGTGCTGAGCTCAAAACCTGTGTGACTGGAGGGGGGGAAGCGACACTGAGGTTTTCCCCGAGGCACGTAGTTCCCATCCCCCTGCCCACACAAAGTCTATGGACTTGTTTTGCCCTGCCTCCCTGATAATAATGGCCCTGGGCACACTATGACCTGGCTGCCTATTGATTTTGGTGATGCCTGTGGGTGCTGTGTGCAGCTGCATCTGCCTGGCGCATCCTGGAGGGGGTGGTGGCCTAGCTGTGGGTCAGGAGTGTCTGTCCCATGCTGCTGAAGCTCCCAAACCATGGGCAGCTTCTTCACCCACTTGTATTGATTGTTCAGGATAAGGCTGACCCGGCTCCTCATTGAGCACTGTAGGGGAAAAGAATAAAACAAAACAACAACAAAAAACACCTTTGAAGCATGCCAAATAACTATGGAAGCACCATTGTCTGTGCTATGTCTGTGTTCTGCCCTGCCTAAGGGAAGCTGGAGGAGTTTCTCCTTGATGCTTTCTATTTGTGCTCACCTCCTACTATCATAGGCAATGCATGTTCATTCCTCAGCCTCAGGTCCCCTTTATACCAGCTTGCTTTGTATCTAGGAGCAAAATAGAGCATAAAAGGAGGTATGACTCATTGCTATGTATTGGATACTGCCTTGCCTATCTGCAGTCACGCTTGACAGGGCGATGTTCCTCTCCTTAAACTGCAGCTGCAGTGAATCTCTTTTGCTTTGTGCCGGGTTTTCCTGTGACTGCTGTAGTTTCTTACATGGACTGCACTTTCTGTAGCTTGCATGGTTCTCATGCCTAACAGCACTCACTGTGACAGGAGAGCCTGTCTCCATCCTCTGCACGCACAGGCCACCAGGTTTAAAATCCTGTTTTTGTGTGACCTCAACTTCAG
Seq C2 exon
GATACTCCAGCAGGAGAGTCCAGAGTCCCAGCAGCAAGAGCAATGACACGCTCAGCGGGATCTCCTCCATCGAGCCCAGCAAACATTCCAGTTCCTCCCACAGCCTTGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490:ENSGALT00000007150:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(13.0=100)
A:
NA
C2:
PF102654=DUF2217=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCTTCTCTCAGCTGCGG
R:
CAAGGCTGTGGGAGGAACTG
Band lengths:
319-1441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]