GgaEX0006054 @ galGal4
Exon Skipping
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5460774-5464595:+
Coord C1 exon
chr17:5460774-5460984
Coord A exon
chr17:5462107-5462219
Coord C2 exon
chr17:5464478-5464595
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGACCTCAACTTCAGGAT
3' ss Score
7.81
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
TCTGTCTTCTCTCAGCTGCGGCTCTCTGCAGGCCTACGTAAGGTACTGTTTGCTACAGCTCTTGGGACGGTTGCGTTGGCTCTTGCAGCTCATCAGCTGAAGCGTCGTCGTCGCCGAAAGAAGCAGATTGCTCCAGAGAAGTGTGGCTTTAAGCCTGGAGGCGTCACAGTGCCCATCCTGCCAACCAGAAGGGTCTCTTCTGTGAAGAAAG
Seq A exon
GATACTCCAGCAGGAGAGTCCAGAGTCCCAGCAGCAAGAGCAATGACACGCTCAGCGGGATCTCCTCCATCGAGCCCAGCAAACATTCCAGTTCCTCCCACAGCCTTGCCTCG
Seq C2 exon
ATGGTAGCTGTGAACTCTTCAAGTCCAACACCAGCATCGGCCGGGATGTGGGAGGCCCAGGCAATGGGAGATGGTGGAGCCATCGGTGATTCCAGTGCAGAAAGCCTCTATGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=1.000 C2=0.750
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(13.0=100)
A:
PF102654=DUF2217=FE(6.9=100)
C2:
PF102654=DUF2217=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCTCTTGGGACGGTTG
R:
CACTGGAATCACCGATGGCTC
Band lengths:
256-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]