BtaEX6046603 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010653 | FAM73B
Description
Bos taurus family with sequence similarity 73, member B (FAM73B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076053]
Coordinates
chr11:99533428-99535961:+
Coord C1 exon
chr11:99533428-99533638
Coord A exon
chr11:99534824-99534936
Coord C2 exon
chr11:99535844-99535961
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCCTGTTCCTCACAGGCT
3' ss Score
10.5
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TCTGCCTTCTCCCAGCTGCGGTTGACACCAGGCCTGCGGAAGGTCCTCTTTGCCACGGCCCTGGGGACTGTGGCCTTGGCCCTGGCCGCCCACCAGCTGAAGAGGCGACGGCGGAAGAAGAAGCAGGTCGGGCCCGAGATGGGAGGCGAGCATCTGGGCACAGTGCCCCTCCCCATCCTCATGGCCAGGAAGGTCCCGTCGGTGAAGAAAG
Seq A exon
GCTACTCCAACCGGAGGGTCCAGAGCCCCAGTAGCAAGAGCAACGACACCCTGAGCGGCATCTCCTCCATTGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
Seq C2 exon
ATGGTGGTGGTGAACTCATCCAGCCCCACGGCTGCGTGCTCGGGACCGTGGGAGACCAGAGGGATAGAGGAGTCTGTGACCACCGCCGACGGCAACGCTGAGAGCCTCTACATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010653-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=1.000 C2=0.800
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(13.0=100)
A:
PF102654=DUF2217=FE(6.9=100)
C2:
PF102654=DUF2217=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGTCCTCTTTGCCAC
R:
CTATCCCTCTGGTCTCCCACG
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]