MmuEX0018463 @ mm10
Exon Skipping
Gene
ENSMUSG00000026858 | Miga2
Description
mitoguardin 2 [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30368877-30371669:+
Coord C1 exon
chr2:30368877-30369087
Coord A exon
chr2:30370295-30370407
Coord C2 exon
chr2:30371533-30371669
Length
113 bp
Sequences
Splice sites
3' ss Seq
ACCCACCCTTCTCCTCACAGGCT
3' ss Score
10.85
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
TCCGCGTTCTCCCAGCTGCGGTTGACACCGGGCCTGAGGAAGGTTCTTTTTGCCACAGCCCTTGGGACTGTGGCCTTGGCCCTGGCTGCCCACCAGCTGAAAAGGCGCCGGCGGAAGAAGAAGCAGGTGGGCCCTGAGATGGGAGGTGAGCAGCTGGGCACGGTGCCCATGCCCATCCTCATGGCCCGCAAGGTCCCTTCGGTGAAGAAAG
Seq A exon
GCTGCTCCAGCAGGAGGGTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTTAGTGGCATCTCCTCCATCGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
Seq C2 exon
GCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGCCAGAGAGGGGATGGAGGCAGCACCCCCACACCAGGCGACAGCCTCCAGAACCCAGACACCGCATCAGAAGCACTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=1.000 C2=0.696
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(13.0=100)
A:
PF102654=DUF2217=FE(40.7=100)
C2:
PF102654=DUF2217=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTTGCCACAGCCCTTGG
R:
CTGCCTCCATCCCCTCTCTG
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types