RnoEX6016308 @ rn6
Exon Skipping
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8934857-8937102:+
Coord C1 exon
chr3:8934857-8935067
Coord A exon
chr3:8936256-8936368
Coord C2 exon
chr3:8936985-8937102
Length
113 bp
Sequences
Splice sites
3' ss Seq
ACCCACCCTTCTCCTCACAGGCT
3' ss Score
10.85
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
TCTGCGTTCTCCCAACTGCGGTTGACCCCAGGCCTGAGAAAGGTTCTTTTTGCCACGGCCCTCGGGACTGTGGCCTTGGCCCTGGCTGCCCACCAGCTGAAAAGGCGCCGTCGGAAGAAGAAACAGGTGGGCCCCGAGATGGGAAGTGAGCAGCTGGGCACCTTCCCCATGCCCATCCTCATGGCCCGCAAGGTCCCTTCGGTGAAGAAAG
Seq A exon
GCTGCTCCAGCCGGAGGGTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTGAGTGGTATCTCCTCCATAGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
Seq C2 exon
ATGGTAATGGTCAATTCATCCAGCCCTACAGCTGCGTGCTCAGGCTCATGGGAAACCAGAGGGATGGAGGAGTCTGTGCCCACCATGGATGGCAGTGCTGAGAGCCTCTATGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513-'11-5,'11-4,13-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=1.000 C2=0.825
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(15.3=100)
A:
PF102654=DUF2217=FE(10.2=100)
C2:
PF102654=DUF2217=FE(10.8=100)
Main Skipping Isoform:
ENSRNOT00000088509fB8739
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGTTCTTTTTGCCACGGC
R:
CAGACTCCTCCATCCCTCTGG
Band lengths:
249-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]