DreEX6082818 @ danRer10
Exon Skipping
Gene
ENSDARG00000089357 | fam73b
Description
family with sequence similarity 73, member B [Source:ZFIN;Acc:ZDB-GENE-050320-135]
Coordinates
chr21:3699022-3702508:+
Coord C1 exon
chr21:3699022-3699269
Coord A exon
chr21:3700311-3700426
Coord C2 exon
chr21:3702388-3702508
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATAACTTTGTGTGTTTCCAGGTC
3' ss Score
10.5
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CAAGCAGACAAACAAATCTCTCTCTCTCTCTGTTTCTCAGTCTATCTTCTCTCAGCTGAAGTTGAGTCCCAGTCTGAAGAAGGTGCTGTTTGCCACAGCGCTGGGCAGCGTGGCTCTGGCTCTGACGGCTCATCAGCTGAAGAGACGCGGCCGGAAGAGGAAGCAGACCCTTGGTAAAGAAGCACAGAAACCTGTGGGGATCCCAGAACAGCTGCTGAGATCCAGCCGACCGGCCTCGCTCAAGAGAG
Seq A exon
GTCCGGTTCCTGCTCGTCAGATGATGAGTCCCAGCACGCGCAGTAATGACACACTCAGCGGTGTTTCATCAATCGCACAAAGCAAACACTCGAGTTCTTCACACAGCATCGCCTCT
Seq C2 exon
ATGCGAGTCCCCTCCTCTCCTAACCAATCAGTGAATGCTGGGGCAGCATGGGAGGCGGAGCCTGTGGCTGAAGAGCCAGCAGTCGGAGAGGATGCCAATGCTGAAAACCTCTATCTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089357-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.829
Domain overlap (PFAM):
C1:
NA
A:
PF102654=DUF2217=PU(6.8=96.9)
C2:
PF102654=DUF2217=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGAAGTTGAGTCCCAGT
R:
TGCCCCAGCATTCACTGATTG
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]