MmuEX0018463 @ mm9
Exon Skipping
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30224397-30226752:+
Coord C1 exon
chr2:30224397-30224607
Coord A exon
chr2:30225815-30225927
Coord C2 exon
chr2:30226635-30226752
Length
113 bp
Sequences
Splice sites
3' ss Seq
ACCCACCCTTCTCCTCACAGGCT
3' ss Score
10.85
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
TCCGCGTTCTCCCAGCTGCGGTTGACACCGGGCCTGAGGAAGGTTCTTTTTGCCACAGCCCTTGGGACTGTGGCCTTGGCCCTGGCTGCCCACCAGCTGAAAAGGCGCCGGCGGAAGAAGAAGCAGGTGGGCCCTGAGATGGGAGGTGAGCAGCTGGGCACGGTGCCCATGCCCATCCTCATGGCCCGCAAGGTCCCTTCGGTGAAGAAAG
Seq A exon
GCTGCTCCAGCAGGAGGGTTCAGAGCCCCAGCAGCAAGAGCAACGACACTCTTAGTGGCATCTCCTCCATCGAGCCCAGCAAGCACTCAGGCTCCTCCCACAGCCTGGCCTCG
Seq C2 exon
ATGGTAGTGGTCAATTCATCCAGCCCTACAGCTGCGTGCTCAGGTTCATGGGAAGCCCGAGGGATGGAGGAGTCTGTGCCCACCACTGATGGCAGTGCCGAGAGCCTCTATGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-'5-5,'5-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.992 C2=0.708
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(13.0=100)
A:
PF102654=DUF2217=FE(40.7=100)
C2:
PF102654=DUF2217=PD(30.8=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTTGCCACAGCCCTTGG
R:
CACAGACTCCTCCATCCCTCG
Band lengths:
245-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: