DreINT0067258 @ danRer10
Intron Retention
Gene
ENSDARG00000056128 | fastkd1
Description
FAST kinase domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1833]
Coordinates
chr9:48552075-48555171:+
Coord C1 exon
chr9:48552075-48552206
Coord A exon
chr9:48552207-48554684
Coord C2 exon
chr9:48554685-48555171
Length
2478 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TTCTGTCTTTCGTCTAATAGTCA
3' ss Score
7.53
Exon sequences
Seq C1 exon
GATGGAGTCGGTACTTTACAAAAATCTGGAAACCTATCGGCCACTGGAAATCACTCGAATTACTCAAGCGCTTGTCCTGCTGCACTGCCAGAATCCCGACATCCTCTCCAGACTGAAAACCAAACTGCTTCA
Seq A exon
GTGAGTGTTTCCAAAACCACAGAGATCTGTTCAGTCACTAGCCCCTTTCACACATACAGACCTTTTCTGAAAATTACAGGCAATTTTCCAGAAAGGGATCATGTCTGAACAGGCCCTTTTTGAAAATACAGATAAATTCATTCCGGCAATTTTCCAGAAAGAGAAGTTGTAACATTACCGGTAATTTGCCGGAATGCTGCGCTGTGTGAACAGAGAAGGAAGATTGCCGGAAAGATTGGGTTAATGCTTAAAATGTGCTGACGTGAAACGTCTACTCCAGCCAATCAGAACATTCAGACGCATTCACATCCATGCTTATAAATATAAAAGCCTTTGAATATTTTTCCAGACACATTCAGCTGCAAGTTGTTAGTCAGATAACGTATATGTTCCTTCTTAATGCCAACTGTGTAAAAAATATTGGTAAAATGCTTATGTTAAACTGCTGTTTGTTTACCTTTAAGCTCTGCTTTAGTTGCTTGACGCGTGTGCATGTGAACACATAGGACACACACACACATATTATGAATATCTCAACATCTGAAAACTTATCCTTGCACATAATTTGTAATGTAGTCAGATGTATAAACATTTAGCTGCGGTTCACGCTTCTGCCTTTTGATGTCTCAAATAGCAGCTGCATGAATGCTAAAGCTTTAAATAAAAGTGAAATCATCAACAACAGGTTGACCCCTTTTATGTTTACAAATACAAGCGCAGCCGTTTAGAGCTCATATCTGGTTAATGATGACAGAATTTACCGGTATTTTGGAATGGATGTGTGAATGCTCTTTTTCTGAAAAATTCCAGAACATCCGTGCCTGTGTGAACAGCACATTTTTGAATGTACCAGTAAAGTCGTTCTGGAAATTTTCTGGATATTCACCGGTATCACTGCGTGAAAGGGGATACTGTCTCAGAGTCTGGGAACAAATCCAACCCGGGCTCATTGTGGAAACGTAGCCCCGCGGACGTTTCTGCGGACCGCGAGATACGTCCCGGAAGGTACGTATTCGAGCGGGTTTTTTTTTCGCGGATCCGCGAGAGGCCGCTGTGTGCGCTTTTTCGCGTCTCGGGTGCCTCTCGGGAGCGAGCGCCGTTCGCGCCCGCGCTGTTCTTGTGCGAAAAGCCGCCGGATCGGCCGACCCGGCCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCCTAAACCCAAGCGACGGTTTGCAAAAGCCGTCCAGAAAAAAAAAAAAAGCAAAAGCCCTCGTCTTCGATTTCGACCGCGTTTTCGGATCCCGCCGCGTTCTTGCCCTTATTTTTCGGATTCTGTTTTTCATCTTACCTGATTTCTGGAACCGCTGTTCCCCGAACTCGATCCTGGTCGTCGTCCCTGCGGCCAGCTCCTCCTCCTCCGCGGCCTCCGCCGACGCAACGCTGTGAGCTAAGCGGACAAACTGGTTGCATCGAGAAAGCCCTCCACTCGGAGGTGAGCCGTCGGCCGGCGAGCGCGAAGAGGAGCAGCGGAGCGGTGCCACACCGCCCCGCAGCGTTTGCTCGAAAAAAACTAAACACGGCCGTACGTACCTCCGGCCACGTAAATCGCGGTCTCCAGAAACGTCCGCGGGGCTACGTTTCCAGAATGAGCTTGGGTTGAACAAATCTTTTCATAAATCTTTTTCTACACAGAATATAGTTCCTCTCAGATTTTTTCTCTCAGTAAAATTAATTTTAATAGTTTAATTTTAAAGAATATAGAATGGAAGATGCTTTCAGCATAATTTAGCAATGGGGGCGAATTGCAGATCAGTTTTGTCCAAGATCCAGTGAATAGATAAAGAATAAAAGAGGCCCCAATACTGAGCCTTGACGAACACCAGCTATCTTTTATATATACAGTTGAAGTCAGAATTATTAGCCCCTCTGTTTATTTTTTTCCTTAATTTCTGTTTAACGGAGAGATTTATTCAACACATTTTTAAACAAAATAGTTTTAATAACTCATTTCTAATAAATGATTTATTTTATCTTTGCCGTGATGACAGTAAATAATATTTGACCAGATATTTTTAAGACACTTCTATACAGCTTAAATTGACATTTGAAGGCTTAACTAGGCAGGTTAGGGTAATTAGGCAAGTTATTGTATAACGATGGTTTGTTCTGTAGACTATCAAAAAAAATAAAGCTTAAAGGGGCTAATAGTTTTGACCTTAAAATCGTTCTTACAAAATTAAAAAACGCTTTTATTCTAGCCAGAACAAAACAAATAAGACTTTCTCCAGAAGAAAAAGTATTATCAGACATACTGTGAAAATTTCCCTGCTCAGTTAAACATAGTTTGGGAAATATTTAAAAAAGAAACAAAAATTAAAAGGGGGGCTAATAATTCTAATTTCCACTGTATAAAACATGTTCTGTAAACCTAATGCATGTAAAAATGTCATAATAGGGCATTTATAATAACACACCATTTCTGTCTTTCGTCTAATAG
Seq C2 exon
TCACCTACAAAGCAGCGTGTACCCTTTTGAGGTGACTGTGCTAATTAGGGTTCTTTCCATGCTCCCCTCCCGCCGTCTTGACGAAGGCGTCGTGTCCCGAGTGAATGCTGTTCTCCCACAGTGCAGCCTCAACAACCTCAACACCTACTCCATTGTTGTGGCCAAATGGATTCGCAATGACCCTTCATATAGGATAAACACCCCTAGCAGGTACGTTCAGCTGCTCCAGACCCTGAACCGTTGTGGACGAGAGCGACTGAAACATTTCCAGCGTCTGGATGGGGTTTTGGAGGAGCTGAAGTTCATGTCGGGGGAATGGTTCGAGGAGATGCTGCTGGAGAAATCGATTGTCACTATGCAGAAAATGATCGATCAGATATCCTGGACTAACGTGCAGGAGCTGGCCATTTATCTGACCAGGACTAACTACTTGTGTACTGCCCTGCTGGACCGCATCGCTAGTGTGACCGTTGAAAATATCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056128:ENSDART00000141405:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]