RnoINT0059313 @ rn6
Intron Retention
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55940204-55942321:-
Coord C1 exon
chr3:55942190-55942321
Coord A exon
chr3:55940691-55942189
Coord C2 exon
chr3:55940204-55940690
Length
1499 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTTTTTCCTCTACATGGTAGTCG
3' ss Score
4.14
Exon sequences
Seq C1 exon
GATCGTGTCTGTCCTGTACAGACATTTGGATAACTGTAAATCAGTAGAGCTATTGAAGATAATACAAGCGCTGACATTCCTACACTTCCAAAGTAAGGAGCTTTTTATGAAACTCAGAGAAGTACTTCTCAG
Seq A exon
GTAAGATCTAAGTATTGAAAAAATAAAGGGTTAAACTAACATTTCATTTCAGAATCTATCCACGTAGCTGGAATTTTCTGGATAAAACCGAATGGCTTATTACTGAATTCCTAAGGTCTGGGTTATACCTAGCATGCTGTTGTAGCATTATGTGAACCCTGAGTGTGATCTCCACTAAACAACTAAACAAGCATATAGCAGTAACGTTAATAAAAGAGCATTTTTTCATACAGTTTTTACAGTTTAGTTACATTAGTAACTAAACATTACCTTATTTTCTCTGGATATGTAACACTGTGCTCTAATTTGGAAGTTACACAGTTTTCCATTAATTTGACTGGGCTAAAGTGAAATATTACTAACTTCAATGTCTAAGTTTACTAATAGCAAATGAGATTGTCTTTACCAATGCACTGTGACTAGCCTGGAGTATTATGTTTATTTTATTTTCCAAGCAATCAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTGTGTTTGTTCTTTGTTCTTTCTAGATAGGATTTCAGAACTCCAAAAACCACAAATAATAGAATTATAGCAACCCAGTTTTGAATTTAATGTGATTGGATCATTTCTTCTTTACTTCCAAACGTACAGGTGCCTTAAAGTGGCCAGTTCTTTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACGGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCACTCTACCGCTGAGCTAAACCCCCAACCAAGTGGCCAGTTCTTAATTTGTTGTTTAACAATTACTGTTCTTGAAGTGGGGGCACACACCTTTAATCCCAGCACTCAGGAGGTAGAGGCAGGTGGATCTCTTGTGAGTTCGAGGCCAGCCTGGTCTACAAAGCAAGTTCTAGGACAGCCAGGGTTCTACAAAGAAACCCTGTCTCAAGAAACAAAAATGAAACGAAAGAGAGTGAGGTTGGGTGTTTGTCTGTCTGTCTGTCTCCCAGTGAGTATGTGTGTCTGTCTGCCAGTGACTTAAGGCTGTATGTCCTGTGCACATAACTAAGAAGGGAATTGAACTGGTGATATTGAGGATCCTCCATGCCACGGACTAAAGGTCACAGCAGCTCCTAATGGTTATGCAGTCACGGAGCTCAGACTCTCCTGCATCAGCACTGGGCACTGTTCTGATGCTGACCCCTTCTTCCCTTGATGGTGTTTTGTTTGTTTGTTTGTGTGTTTGTGTGTGTGGTTCTTTTTTGTTTTTGTTTTTGTTTGCATAAAAATGTTTGAAGGATGGTTATGTCACCTTAGCCTTTTCTTAGTGACCACTTGAGACCTGTCCCCTGTGAATAAGTCTTAAATGAAGTGGCTTTCTAAAGCCACCTCACCTGTCAAGAGCAGTTGTGTAACACTATTTTACTCCATGTACTTTGGGTGCTTTTTGTTGTTGCTGGTGTGTTGATTATGTTCTTTGTTTTTTTCCTCCTTTTTCCTCTACATGGTAG
Seq C2 exon
TCGTTTGGAAGCTAGTGTCACACCCAGCGAGGTTTCCGTTCTGGTCTCTGCTCTCTCCATGCTTCCATATCCTCACCTCAACGAAACAGCCCTGTCCCGAACTGAGACAGTTTTACCACAGTGCGACTTCAGGGAACTGAGTGATTTGGTAGTGTGTCTCATGCGCTGGATTCAGAATGATCACCTGTGCTCGGCTAGCACTGCTGGGAAGCAACTGGACCTCCTTCAAAAACTGGATCACTGGGGCCATCGCCGGCTGCAGCAGAGCACCAGCTTGGATCTACTGTGGGAGGAGCTTAAGTCTGTGAAGGGAGAGTGGCTTCATGAGTCCCTGGTTGAAGAATCAATCACCGCTTTGCAGCGCTTTATGGATGAGATCGATCACAGCAATGTCGCCAAGATCGCATCTTTCCTTTCCAAAACTAACTACCTCAGCACTCCGCTGCTCGACAGGATAGCTTCGGTGGTCGTTGAGCAGATCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335:ENSRNOT00000036585:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGCTGACATTCCTACACT
R:
CCCACAGTAGATCCAAGCTGG
Band lengths:
358-1857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]