GgaINT0046202 @ galGal4
Intron Retention
Gene
ENSGALG00000009841 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
Coordinates
chr7:18149213-18150871:+
Coord C1 exon
chr7:18149213-18149344
Coord A exon
chr7:18149345-18150384
Coord C2 exon
chr7:18150385-18150871
Length
1040 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
TTCTTTCTGTTTCTTCTCAGTTT
3' ss Score
10.31
Exon sequences
Seq C1 exon
AATGGTTTCTGTTCTGCACAGACACTTGGATAGCTATCACGTATTGCAGTTGGTAAAGTTAACACAGTGCTTGGTGTTGTTGCATTGCCGTGATCAGGAGTTGTTTGCGAAGCTGAAAATGTTGTTACTTGG
Seq A exon
GTACGTGTTTGTTCTTGAAAATTCAGTGTCTTATTTAATTGAAGTATTACACAGTAGTCTAGTTAATATTTTAAATAACAAGATAAAATATTTGTTTTCCTGAAATATGAATAAGTAGCAAGCTATTACAGTGATTTACTTTAATTAAACACATAAATCAAAGGATATGAAATGTGTTTTGTCTTGGCTGTAGATCTAGTAGTATCTGCTAATAAAAGTGATAGCTTTTAAAACATGTTCTTTCCCCCTCCACTGGCTACTGCAACATAGAGACACTGAATAGGAAATTTTGGCTGATACTTTATAGGAAGGATATGTATTAATCTCTTCTTTGATACTTGAAGAAACAGTCAATGGAAAGTAAGTAAGGATATCGTGGCTGGAACAAGTGGAAGTATAAAGCAGAAATACTCTTCTACAGATCAGTGACCTTTCTAGTTAGTTCTCAGTGTTGTGAAGGGATCTGCCACCATTGCTTTCACTTTTTGTGGATGACACCTCTGTGTTCCTCGGGCACCTCAGAACCTGGTGCTCCCCAGGATACCAGCAAAGAATAAGTTGATATGTCAATCACAGAAATTATCCTTGCCCTAGAAACCCACAAACTCAGTTAACAAAGAGCAGAACTTCCTTAGTAAGTGCTTCTGTGCTCTCAGTAACACTTCAAGCCTCACCAGTAAGATGCTCACTGTCATCTTCCTCTTTTCAATTTGAATGTTAGAAGAAAGAAATTAATGTTGAAATGAAAAAACAAAAACAAAAAAAACCAGTCACTGTCAGTGTGAATTTTCTGTCACTGATTTTGTGCTGCTTTTCTTCTTGAAACAATATGCTACTCTTGCCTTTCAAATAGAACTTAGAAGCAGCCCTGCCCGTGTCAGGGGTGTTAGAACTTGATGATCCTTGAGGTCCCTTCCAGCTCAGGCCATTCTATGATTCTATGACTTTGTTTGCTTTCTTAAAAAAACAAAACCAAAAATAAGCAAATGTTTGCACTCTGTCAATATTGATGGTCTGTTTTTCTTTCTGTTTCTTCTCAG
Seq C2 exon
TTTTCTAAAATCTAGTGTCATACCTTCTGATACTGCTGCAATAATTCGCACGCTGGCTATTCTTCCATCCTCTCAAGTGGAAGAAGTCATTATAAACAAAGCAACAGCAGTTCTACCTCAATGCAGGCTCCAGGACCTCAGTTGCATTGCTACAGCTCTTGTCAAATGGAATCATTATGACAAGCTGCACTGGCAAAACACTTCTCAACTACACGTAAAGCTTCTGCAAAAAGTAAATGACTGTGGATTTCAGAGGCTTCAGAAAGCCAGGAACTTAAATCTCCTGTTGGAAGAACTCACACATGTGAATGGAGAGTGGTTGCAGGAAGTCATCAGTGAGGAGACTGTGGCTGCATGTCAGCGTTTGATAGATCATGTAACACAGGCAAATGTGTTACAGTTGTCTATTTTTCTCATGAAAACAAACCACCGCTGTCCTTCGTTACTTGACAGAATAGCATCTGTGACTGTTGAAAATATAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841:ENSGALT00000016000:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCATTGCCGTGATCAGGAG
R:
TGTGTGAGTTCTTCCAACAGGA
Band lengths:
356-1396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]