GgaINT0046202 @ galGal3
Intron Retention
Gene
ENSGALG00000009841 | FASTKD1
Description
NA
Coordinates
chr7:20113149-20114807:+
Coord C1 exon
chr7:20113149-20113280
Coord A exon
chr7:20113281-20114320
Coord C2 exon
chr7:20114321-20114807
Length
1040 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
TTCTTTCTGTTTCTTCTCAGTTT
3' ss Score
10.31
Exon sequences
Seq C1 exon
AATGGTTTCTGTTCTGCACAGACACTTGGATAGCTATCACGTATTGCAGTTGGTAAAGTTAACACAGTGCTTGGTGTTGTTGCATTGCCGTGATCAGGAGTTGTTTGCGAAGCTGAAAATGTTGTTACTTGG
Seq A exon
GTACGTGTTTGTTCTTGAAAATTCAGTGTCTTATTTAATTGAAGTATTACACAGTAGTCTAGTTAATATTTTAAATAACAAGATAAAATATTTGTTTTCCTGAAATATGAATAAGTAGCAAGCTATTACAGTGATTTACTTTAATTAAACACATAAATCAAAGGATATGAAATGTGTTTTGTCTTGGCTGTAGATCTAGTAGTATCTGCTAATAAAAGTGATAGCTTTTAAAACATGTTCTTTCCCCCTCCACTGGCTACTGCAACATAGAGACACTGAATAGGAAATTTTGGCTGATACTTTATAGGAAGGATATGTATTAATCTCTTCTTTGATACTTGAAGAAACAGTCAATGGAAAGTAAGTAAGGATATCGTGGCTGGAACAAGTGGAAGTATAAAGCAGAAATACTCTTCTACAGATCAGTGACCTTTCTAGTTAGTTCTCAGTGTTGTGAAGGGATCTGCCACCATTGCTTTCACTTTTTGTGGATGACACCTCTGTGTTCCTCGGGCACCTCAGAACCTGGTGCTCCCCAGGATACCAGCAAAGAATAAGTTGATATGTCAATCACAGAAATTATCCTTGCCCTAGAAACCCACAAACTCAGTTAACAAAGAGCAGAACTTCCTTAGTAAGTGCTTCTGTGCTCTCAGTAACACTTCAAGCCTCACCAGTAAGATGCTCACTGTCATCTTCCTCTTTTCAATTTGAATGTTAGAAGAAAGAAATTAATGTTGAAATGAAAAAACAAAAACAAAAAAAACCAGTCACTGTCAGTGTGAATTTTCTGTCACTGATTTTGTGCTGCTTTTCTTCTTGAAACAATATGCTACTCTTGCCTTTCAAATAGAACTTAGAAGCAGCCCTGCCCGTGTCAGGGGTGTTAGAACTTGATGATCCTTGAGGTCCCTTCCAGCTCAGGCCATTCTATGATTCTATGACTTTGTTTGCTTTCTTAAAAAAACAAAACCAAAAATAAGCAAATGTTTGCACTCTGTCAATATTGATGGTCTGTTTTTCTTTCTGTTTCTTCTCAG
Seq C2 exon
TTTTCTAAAATCTAGTGTCATACCTTCTGATACTGCTGCAATAATTCGCACGCTGGCTATTCTTCCATCCTCTCAAGTGGAAGAAGTCATTATAAACAAAGCAACAGCAGTTCTACCTCAATGCAGGCTCCAGGACCTCAGTTGCATTGCTACAGCTCTTGTCAAATGGAATCATTATGACAAGCTGCACTGGCAAAACACTTCTCAACTACACGTAAAGCTTCTGCAAAAAGTAAATGACTGTGGATTTCAGAGGCTTCAGAAAGCCAGGAACTTAAATCTCCTGTTGGAAGAACTCACACATGTGAATGGAGAGTGGTTGCAGGAAGTCATCAGTGAGGAGACTGTGGCTGCATGTCAGCGTTTGATAGATCATGTAACACAGGCAAATGTGTTACAGTTGTCTATTTTTCTCATGAAAACAAACCACCGCTGTCCTTCGTTACTTGACAGAATAGCATCTGTGACTGTTGAAAATATAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841:ENSGALT00000016000:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCATTGCCGTGATCAGGAG
R:
TGTGTGAGTTCTTCCAACAGGA
Band lengths:
356-1396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]