DreINT0067824 @ danRer10
Intron Retention
Gene
ENSDARG00000099139 | fbxw5
Description
F-box and WD repeat domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2571]
Coordinates
chr5:53826166-53826585:-
Coord C1 exon
chr5:53826402-53826585
Coord A exon
chr5:53826315-53826401
Coord C2 exon
chr5:53826166-53826314
Length
87 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGAG
5' ss Score
-1.16
3' ss Seq
TGCTGTTTTTAAATCCGTAGACA
3' ss Score
8.34
Exon sequences
Seq C1 exon
CTTTGGGACACCGAGCAGTCCGATGGCACCATCTCTCTGGTTCACAGCTGCAGCATGCGACAGTATAACTGGGGCTACACTCAGTTCTCTCAGTTTAACGCTGATGACACACTCCTGCTGGTGTCAGGGGTCTACCTGGGCCCACATCACTCCTCCGCTGGAGAGATTGCAGTCTTCAGTTTGG
Seq A exon
GTAGAGACAGCTATTATATGCATTGCCCTCACACATCAACAGTAACTGTAAGCTGATAAGTGATTGGTGCTGTTTTTAAATCCGTAG
Seq C2 exon
ACAACTACACTCTGCTGTCCCGTGTGAGAAATAAACCCTATGATGTGTTTGGCTGCTGGCTGAATGAGACTCACCTTATTTCTGGTAACCTGCATTGGATTGGCAACATGACTTCCTGCTCGGTGCTCTGGCTCAACAATGCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099139:ENSDART00000165719:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(5.1=3.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGAGAGATTGCAGTCTT
R:
GGAAGGCATTGTTGAGCCAGA
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]