MmuINT0063575 @ mm10
Intron Retention
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25502871-25503273:+
Coord C1 exon
chr2:25502871-25503045
Coord A exon
chr2:25503046-25503124
Coord C2 exon
chr2:25503125-25503273
Length
79 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
AGCTGTGGCCTTCCCCCCAGACT
3' ss Score
7.87
Exon sequences
Seq C1 exon
ATCTGGAACAACGACCTGACCATCTCACTGCTGCACAGTGCAGATATGAGGCCATACAACTGGAGTTACACCCAGTTTTCCCAGTTCAACCAGGATGACTCACTGCTGCTGGCCTCAGGGGTGTTCCTGGGGCCACATAACTCCTCCTCAGGCGAGATAGCTGTCATCAGCTTAG
Seq A exon
GTAAGTGTGGGCATTGGGTTGGGCTACCTGTCCCATTGTGCCCTGCCAGCAGTCTGCCCAGCTGTGGCCTTCCCCCCAG
Seq C2 exon
ACTCCTTCGCCCTGCTGTCCCGTGTGCGAAACAAGCCCTATGATGTGTTTGGCTGCTGGCTCACAGAAACCAGCCTCATTTCGGGGAACCTGCACCGCATTGGAGATATCACCTCCTGCTCAGTGCTGTGGCTCAACAATGCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095:ENSMUST00000015239:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(5.1=3.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAGGCGAGATAGCTGTC
R:
TTGTTGAGCCACAGCACTGAG
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types