GgaINT1013174 @ galGal4
Intron Retention
Gene
ENSGALG00000008966 | FBXW5
Description
F-box/WD repeat-containing protein 5 [Source:RefSeq peptide;Acc:NP_001025865]
Coordinates
chr17:520169-521449:+
Coord C1 exon
chr17:520169-520343
Coord A exon
chr17:520344-521300
Coord C2 exon
chr17:521301-521449
Length
957 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
CTGTTTCCCCTCTCTTCCAGAGA
3' ss Score
11.41
Exon sequences
Seq C1 exon
ATCTGGAGCAATGAGTTGGACATCTCCCTGCAGCACAGCTCCAACATGAGGCCGTACAACTGGAGCTACACACAGTTCTCCCAGTTCAACTCCGATGACTCCCTCCTTCTGGTATCAGGTGTCTTTGTGGGGCCTCACAACTCCTCATCAGGAGAGATTGCCGTAATCAGCATGG
Seq A exon
GTAAATTATGCCTTTGCCTTCACTGAGCCTTCCGGAGAGGTGTAAAGTGGTGGGAGGGAGATGGGGTTCTCTTCTGCCCCTTGCCCTGTGTATGCTGTGGCCTTGACCTCTGCTTGTCCTTTCCACCATCTGCACAAAGAGGTCCTGGTTGCAGTTTCTATGGGTAGGCCTTCTGGATATCCTTAGGGATAACTCATATCATCACCTGAAAGTGCAGTGTGGCATATATAGAATCATCATGGAATCGTAGAATGGCCTGGGTTGAAAAGGACCATAACGATCATACATGTTCTCATTTAATTTCATCTCTAAGTGAGAGTCTGGGCAAGGTGTGAGGTGGCTGTGTTCCCAGCTGTCCTGAAGCTACCATTTCTGCCTCGAGCAGAGCTGGTCCTGCCCTGAGGTCTCACGTGGCTTTGAGATGCAGTCACCCTGCCCAGCTCAGCCTTTTCTGCTGCAGTTCTGTGAAACCTGCTGAACTCAGCTGCGCTGTCTCTTGCCATCTCTGTGCCACAACCAAGAAGTGCTGCTCAATGCACAGCTCTCCTGTTCAGAAGGGCTTCCATGGGGTGGAAGGCTGGGATTGTGTGAAGAAGATATGTATGTGTTTGACGTGTTCTGGTCCCTGGGGCATCTGCTTCGGGCCATGCTTGGAGGAAGGCTGTGTAGCTATGTTGCATTCTGGTCTGGTTCCGTCTGGCTGCCCTTATGTTTTGTTTTCGCTCTGTATGTACTTCCCACAGATCTCTGTAGAAGAGAGAAATGATCTGTGTCTGCAGCCATGCCTTGGGGCTGGTCACTGGTTGGGCAGTGTCTGCTCAGCTTGCAGTGAAGGTGCTGTGTCAGTGCCTCCCCTGCTGTGGGCTGAGACTCCATTTCCCATTCCTTTTGCAATGGTTTCTCCAGATCCCCTGCTTGGAGCCATCGTCTCATGCTCCTGTTTCCCCTCTCTTCCAG
Seq C2 exon
AGAACTTCACACTGCTTTCCAGAGTGAGGAATAAACCTTATGATGTATTTGGCTGTTGGCTGAATGAAACCAACTTAATATCTGGCAATCTGCATCGGATTGGGCGTATAACCTCCTGTTCTGTGCTGTGGCTGAACAACGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966:ENSGALT00000014582:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(5.1=3.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCAATGAGTTGGACA
R:
GAAAGCGTTGTTCAGCCACAG
Band lengths:
320-1277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]