BtaINT0061644 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010515 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr11:106289088-106289534:+
Coord C1 exon
chr11:106289088-106289262
Coord A exon
chr11:106289263-106289385
Coord C2 exon
chr11:106289386-106289534
Length
123 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CCTTCCCTCTGCTCCCCCAGACA
3' ss Score
10.16
Exon sequences
Seq C1 exon
ATTTGGAACAACGACCCGACCATCTCGCTACTGCACAGCGCGGACATGCGGCCCTACAACTGGAGCTACACCCAGTTCTCCCAGTTTAACCAGGACGACTCGCTGCTGCTGGCGTCTGGGGTGTTCCTAGGGCCCCACAACTCCTCCTCAGGCGAGATCGCGGTCATCAGCCTAG
Seq A exon
GTAAGAGAGGGCTGGGGGCGGGCGGCCCGACCACCCCGCCCCTAACGCTCCACCCTCTGCCCAGACACCTGCGCCCCACCCCTCCAGCCCCGCCCGCCCCGCCCCTTCCCTCTGCTCCCCCAG
Seq C2 exon
ACACCTTTGCCCTGCTGTCCCGGGTCCGCAACAAGCCCTACGACGTGTTTGGCTGCTGGCTCACCGACACCAGCTTGATCTCGGGGAACCTGCACCGCATCGGGGACATCACGTCCTGCTCAGTGCTCTGGCTCAACAACGCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010515:ENSBTAT00000013887:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(5.1=3.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACGACCCGACCATCTC
R:
GATCAAGCTGGTGTCGGTGAG
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development