DreINT0068621 @ danRer10
Intron Retention
Gene
ENSDARG00000001976 | fkbp16
Description
FK506 binding protein 16 [Source:ZFIN;Acc:ZDB-GENE-050208-116]
Coordinates
chr18:25667067-25669987:+
Coord C1 exon
chr18:25667067-25667395
Coord A exon
chr18:25667396-25669817
Coord C2 exon
chr18:25669818-25669987
Length
2422 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTGTTTTCCTGCTTCTAGATG
3' ss Score
10.57
Exon sequences
Seq C1 exon
GGAGAATAAAGAGGCAGAAGAGAGTGAAGAAGAGTTTGCTGAAAGCTTTACAGATGCTAATGCCTCCACCAGTTACCCAACAAATGAGCCCATTACTTCAAAAACCCACATCGGCCCACCTAAATCCATTGAATCCAATCCAATGGAGGACAGAGGAAAACTGTCTAAGACTCCCAGCTTTGGGAAAATGGTTCGGTTTAAGGAAATTGAAGTAGTGGAGGAAAGGGACACCTCAGACGACACTCTTTTTCCAGACTTTGACATGGAAGAGTGGACCACCAGCAGGTTTGAGGAGCTTTTTCTGGCAGACGACTGGAAGAACATTACAG
Seq A exon
GTGAGATGTTCAAGTGATCATATGAAACCCTAAAGAATTCAACTGTTTACCTGGAAATCAAATCCCATAAATGTTATATTTGTTCTACACTGCAAGGTTTCATAAAGGGTTCACAGTGAGGCTACAGATTAGAAAAAAATTGTTACAATTTAGAGTAAAATTCCTGAAGTGAACTGGACGTTACTGAGACATATATTTTAGAATGATGTTGAACTTTCAACTGAAACATACTAATAAGTAGGGGGCGGGGCTTTCTTTTTACACATCAATCATGCTTAGCAATTTAACAGAAAGAGTTATGAAATTTGTGACTGAAGCAGTCAAACAGATATTATCCGAGAAGGACCACCACTCCAAACGTTGAAGGAGATGGTCAGGTTTTGATTGAAGATTACAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTAATAATAATTTTTTTTTTTTTTTACTGGATTAACATGCATGGATTTATTGTTTACCTAAAGTATAACAATTTGCACTAGATTTAAAATTTTCATAGTTTCAAAGTCACACAGACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATACATACATATATATACATATACAAATATTTTGCTTGTGGTTAAATTTACCATGGTTCCAAAAAAAAAAAAAAAAATGATTGAAAAAAGATGCTTGACTGAAAGTCAGTCACTGTACACTCTTAAAATTTAAGGTAGTTTCTCGACATTGATAGTTCCATAAAGAACGCTTAACAGCTAAAGAAACTTTCCACTGCTTAATAGATGAAAAGGATTTTTAGAATATTAAAATGTACTTCACACTGACAACAAAGGGCTCTTTGGGGAATCCAAAATGATACTCGTACAGTAATACTATCAGAGTCCCATTTTTGGAACCTTTATATTGAGCAGAATAAGAGTTGTATTGATTTCATACAACACTACACTTTTGACAATACACAATATTTTATAAGCAAATATTAAATATAAGCAACATTTTGCTAATGTTACTGCATGATTAGCATGAAGGACATTGTGATAATTTAAAGATACATATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACACACACATATATAATCATATACACACACACACACACACACACACACACACACAAAATATAATATAATATAATATTATACTACCTAATATTTTTAGCTTCTCTTGAATATTGCTGTTTTAAAAATTATATAAATTTGTGTGTACTAATTTTGGACAGTTATCTTTATAAAGCGCCAGATTTGGTTTCTGTACTGACTAATCTGTATATGCACAAATTTAATATTGTAAAGCTTCCTATAGAAAATATTAACTTAAATGAGATATTTATGATGGGCGTACTCGTATATGCTGAGCAATGGCATCAATTGTTAAACAAACAAACAAAAAAAATTATATTAACCTAAATATTTCAATTGTGCAGGTTATTTAGTGAAAAAAAAAAAAGATTATTAAAATGTTCTTGCCAATAATACAAACTTAGCTTATTTAGTAACAGGCCAGTTAACTGTAGGGAACAATAATTGGTTGTTCTGTGCAATAAATAACCTTTATTTCTTTATTTTTGCTATTGTGGCAGCTGCTTACTTGCATGTTTTGGATGTTGGTTTTTGAATGTGATGGCGGTGAACTGATGTCCCTAAAAGTAAAGTCTTATTTCACCTCAATATTACAATTCTGTCATCACTTATTCACCGTCATGTTTTTGCAACTGAAGAAAAATGTTTGCGTTTTGTTGTCCAAACATTAAAAGTCAATGGAGTCTGATGTTGTTTTGAGCATCATTGACTTTCATTATATAGACAAAAACAGCTCTTCTTTCTGTTCCACAGAAAAAAAAAAAAAAAGGTCATGCAGGCTTGGAAAATCATGTGGGTGTTTAGAGTATGACAGAATTTTAGATTTTGGATTAGCTAAACCAGAAAGATCTTCATGGTCAACCATTTACTCACAAAGGTTTTGTTCACACTTGGCAAGTTTGGTTTGTTCCTGATGCAAACAACATGTGGACTGGGATCACTTAAAAAAGATGTATTTTTCCATTCGAAATGTGGTGTAGTTAAACCAAAAAATAAGCAAAACACTAACCAAAGATCTAAACAAACCAAAATCAGGACATGATGTCACAAAGTGTGATCATAAAAATGACAGAATAGCCAAAAAAGGACCAAACAAACCAAAATAAACAAACTACGAGTTTGAACACACCCCAAGAACATCCCTTAGGTCTGACGCTATTGTTTTAGGCTCTTGCTGATTTCTTTCACCTCCTCTGTTTTCCTGCTTCTAG
Seq C2 exon
ATGACTGTCTGCTAAAGAAAAAAGTGTTACAGGCCGGTCCCGAGAATGCCCTGACCCCGGCTTGGGGTCAAGAGGTCACACTGAAAATGCAGGGTGTGCTTGAGGACAGGACTGTGGTGGAGAAAGACAGTAAACTGGTCTTCATTATTGGAGAGGGAGATGTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001976:ENSDART00000007856:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0025423=FKBP_C=PU(45.5=69.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]