DreINT0069061 @ danRer10
Intron Retention
Gene
ENSDARG00000055713 | fmnl1a
Description
formin-like 1a [Source:ZFIN;Acc:ZDB-GENE-120215-83]
Coordinates
chr3:37072380-37072645:+
Coord C1 exon
chr3:37072380-37072491
Coord A exon
chr3:37072492-37072568
Coord C2 exon
chr3:37072569-37072645
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
CATCTTTTTTTCCCAAACAGTCT
3' ss Score
9.04
Exon sequences
Seq C1 exon
AATAACGTCACTGGCACACAGCAGAAAAACTCTGCGAATTGCCCGACTGGCCACCCAGAGAGATGATGTTCACCTCTGCATTATGTGTCTACGTGCTATTATGAACTATCAG
Seq A exon
GTATCTCAAGACAGCTTCTCTTCTCAAAAGATAATTTTAAAACAACTTTGTCTGACTCATCTTTTTTTCCCAAACAG
Seq C2 exon
TCTGGGTTTAATTTAGTCATGACACACCCTAGATGTGTCAACGAAATCACACTTAGTCTCAACAACAAAAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055713:ENSDART00000151144:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(45.1=100)
A:
NA
C2:
PF063718=Drf_GBD=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAACTCTGCGAATTGCCC
R:
CTGGGGTTTTTGTTGTTGAGACT
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]