MmuINT0065099 @ mm10
Intron Retention
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103185621-103186487:+
Coord C1 exon
chr11:103185621-103185729
Coord A exon
chr11:103185730-103186410
Coord C2 exon
chr11:103186411-103186487
Length
681 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
AACCTCTCCTCTCTCCCCAGTCC
3' ss Score
10.1
Exon sequences
Seq C1 exon
GCTGACCCCTGCCCACAGCAGGAAGGCGCTGAGGAATTCCCGAATCGTCAGCCAGAAGGATGATGTCCACGTGTGCATCATGTGTCTAAGAGCCATCATGAACTACCAG
Seq A exon
GTCAGCCGGTGGCATGGGATTGGGGCCTCAGGAGATGGCTTGTCCTCCTGGGACCTGTGCTAGCTGCTGATGTCCTAAGACCCTGGGTCACCTCTTGCCTGGAACCCTACGAGCCTGGGGTCTGGGCTTTGGTGGGGGTCTGGAGGCTGGGAAGTTTTGAGGGAAAGCCCTGGGTTTGATTACATTCATGTCAGGTCTGCTGAGATGGCCTTGGGTGTGGTCAGGGGGAAGCAAGGGGCTCAGATGGGACCAAGGATGGTTGGGTAGTGGAGTCCATGGGAGGGCCAGCTGGTACAGCTCCACTTCTGTGGTTCCTCATCTCTGTAAACTTTCTTAAAACGTTATGGGATTTTGTGTGATTTTTTTTTTTAAGTAACTATTTCATGGCTGTCGGCATCTTAGATTACAACTTTGTATATGCCCCATATGTCAAAAGGTTGGACATGCCTGCATAGCCTCGCTATGTCCACAGTGCTTGGCACTGGCTTTTGACAAGACAAAATGACCTTGGAAAGGGGACAGGGTTGGGCCTTGGCTCCTTAAGAAGAGGTAATGGCTGGATGTGAGGAGTGTCCTAAGCTTGGAGCACTAGAGGCCAGAACAGCATGGCACAGACTACGCGGGAGTTGCTGGAAGTTTTGGGGACCTGCCTAGAGGTGCTAACCTCTCCTCTCTCCCCAG
Seq C2 exon
TCCGGCTTCAGCCTTGTTATGAACCACCCAGCCTGTGTCAATGAGATCGCTCTAAGCCTTAACAACAAGAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805:ENSMUST00000042286:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(45.3=91.9)
A:
NA
C2:
PF063718=Drf_GBD=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCCTGCCCACAGC
R:
TGGGGCTCTTGTTGTTAAGGC
Band lengths:
184-865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types