BtaINT0063168 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45509325-45510228:+
Coord C1 exon
chr19:45509325-45509433
Coord A exon
chr19:45509434-45510151
Coord C2 exon
chr19:45510152-45510228
Length
718 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
GACCTCTCCTTTCTTCCTAGTCC
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTTGACCCCGGCTCACAGCAAGAAGGCCCTGAGGAATTCCCGCATCGTCAGCCAGAAGGACGACGTCCACGTCTGCATCATGTGTCTGCGTGCCATCATGAACTACCAG
Seq A exon
GTTGGCCAGTGGGCCTGGGGCATGGGCACTGACTGTCCTCCCTGGGGACTGCCTAAACTGCTGGGGTTCTGGAACCAACTGTCCCCCACCCTGCCCCCAGTGGAATCCTGGGGACAGGCTGTTAGCTTGAGTCTTAAGAGGAGAAGCACAGATTTCTGTTGCCTCTTAGCCAGGTCGCCTAGAATACCCTGGACAGGGCTAGGGGTGTGGACATACCCTACATGGGGGCATAGGCACCCCCATCAAGAAAGGCTAGCCATCCGCGGGAGAGCAGTGTCTGGGTTATTTCGCTTGGAGGGGTGATTGGTGAACCGAGTCCTTCCTCACTCAGCGGGCCTCTCCGGACTCACTGTGTCCAAGATGCTGAGTCTTGACACTGGGTTTTGAACAGACAAAGGTATTTTTAAAAAGGGGCCAGGCTTTGGCTGCCACTGAAGAGGCTGTGGTTGGATATAAAGAACTTCCTGGGAATTCCCTGATGCTTCAGTGGTTAGGAATCCATGCTCTTAGTTCTGGGGCCCCAGGTTCCACCCCTGGTCAGGAAACCAAGATCCTACAAACTACCGGCACAGGCGAAAAAAAAAAAACAACAAAGAACTTCCCAGGGCACTGAGATACCTGGATGGCATGGCGCTCACCATGCCGGAGGCACGGGACAGGAGGGTGCTGGCAGTCCTCGGGGTCTGCCCAGAGGAGCTGACCTCTCCTTTCTTCCTAG
Seq C2 exon
TCCGGCTTCAGCCTCGTCATGAACCACCCAGCCTGTGTCAATGAGATTGCTCTGAGTCTCAACAACAAGAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(46.1=94.6)
A:
NA
C2:
PF063718=Drf_GBD=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGACCCCGGCTCACAG
R:
TGGGGTTCTTGTTGTTGAGACT
Band lengths:
185-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development