HsaINT0065119 @ hg19
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:1212]
Coordinates
chr17:43313503-43314724:+
Coord C1 exon
chr17:43313503-43313611
Coord A exon
chr17:43313612-43314647
Coord C2 exon
chr17:43314648-43314724
Length
1036 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GACCTCTCCTCTCTCCCCAGTCT
3' ss Score
10.05
Exon sequences
Seq C1 exon
GCTGACCCCAGCCCACAGCAGGAAGGCCCTGCGGAATTCCCGCATCGTCAGCCAGAAGGACGACGTCCACGTCTGTATTATGTGCCTACGCGCCATCATGAACTACCAG
Seq A exon
GTCAGCCGAGGGGCATGGGACTGGCGACTAGGGAGCCCAGCCTGTCCTCACTGGGGGCTACACAAGCTGCCGAGGCTCTGGGATCCACTGTCCCTTTACCCTGTGCTGTGCTGGGGAACTTGCGCATCTGGGCTGTTGGCTCAGGCTTTTAAGGCTGATGAGTCTTGAGGGGAAGCCCATGTTTTTGCTGCCTCTGTCAGGTTCTCTGAGTACCCCTGCCCATGGCTGGGCATGAAGGAGCCTCACATAGGGACTGGGCTCACCTACCAAGAAGGGCTGGCCGGAGGGCCAGGGGAGAACAGCCTCGGGTCGATTCATTTGGAGGGCTGATGGGTGAAGCTGGGTCCTCCTTTACTTAGCCCGCCTTTAAGCCAGCTTCACGGTTTCCAAGGTGCCTGATGCTGGCTTTTGGAAACACAAAGGTTTTTAAAAAGAGGCCAGGTGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAAGCGGGAGGATTGCTTGAACCCAGAATTTGAGATCAGCCTGGGCAACATACTGAAACCCCATCTCTATGAAAATAAAAAAATAAAAAATAAATAAAGAGAGGCCAGGCGTGGTGGCTCATATCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGCGAAACCCCGTCTCTACTGAAAAAAATACAAAAAAAATCAGTTGAGTGTGGTGGCAGGTGCCTGTAATCCCAGCTACATGGGAAGCTGAGTCAGGAGAATCACTTGAACCCGGGAGGCAGAGACTGCGGTGAGCTGAGATGGCGCCACTGCGCTCCAGCCTGGGTGACAGAGGGAAACTCCATCTTGAAAAAAAAAATAGAAACAAGGCCAGGTTTTGGTGGCCACAGAAGTTGCGGTTGGATACAAAGAACTTCCTAAACTCGAGGGCAGTTAAAGATCCACGTGGCGTGGGTGCCTGAAGTCCTGGGGGGCCCTTCCTGGAGACACTGACCTCTCCTCTCTCCCCAG
Seq C2 exon
TCTGGCTTCAGCCTTGTCATGAACCACCCAGCCTGTGTCAATGAGATTGCTCTGAGCCTCAACAACAAGAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922-FMNL1:NM_005892:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(45.3=91.9)
A:
NA
C2:
PF063718=Drf_GBD=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCCAGCCCACAGC
R:
TGGGGTTCTTGTTGTTGAGGC
Band lengths:
184-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)