DreINT0069632 @ danRer10
Intron Retention
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6026455-6029062:+
Coord C1 exon
chr21:6026455-6026521
Coord A exon
chr21:6026522-6027645
Coord C2 exon
chr21:6027646-6029062
Length
1124 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AACACACTCCTCTCCCTCAGACC
3' ss Score
8.64
Exon sequences
Seq C1 exon
CCCTGTCATTTTGACTTTGCTGTGTTTTGTCCAAACATCACAGAGGCCATCGCGTCCTGTAATGCAG
Seq A exon
GTAAGGAGTCCTGTACATTCATTACAGGTAATTAACATTACAGCTGCTTCAAGAAAGACTATATATATTCCACATTTTAGGATGCATTTTGACTAAAGTATACAGCAGAGCCTGGCAAAAGAAAACATCTCTATTACATTAGATTTATTTGCTTTTTAAAGCATTGAATTGTTTTAGTAAAATAGTAATGTCAGACCCTTGTGCAGTATTTGTAGGACTAATATTACATTTATTCAGCCTTTTAGATGTGTTAAATAAAGCACAATCAGGCATGGCCCTAAATAATTGCAACAATATAAATTTTTCTTTTAAAATAAGAAACATTCTGTTTTATATTTGGTATATTTTAAACAAATATTTAAACATCTTTATAATTTTATAATAAAATTGTTATTTGTATTTGTTTATTTATTATTATATTGTTTGTTTATTTTGTATATGTTATTTATATTGTTATTAGAATTTAATTCTTTTCCATTATTTTTAAAGCAAATAAGGAATATTTTTAGAAAATGACATTCTGTTATGTATATGGAATATACAGTTGAAGTCAGAATTATTAGCCCCCCTTTGAATGTTTTTTTTTTTTTTATTATGAGACGTAAACGTTTTTATTTTGGATGTGATTAATCGCAATTAATCTTTGCTCAGCACTAATGTTTTAATTTTTATATTAAATTATTTTAATCAGAGTTTCTATTTGTTATAAATATTTTTGTTTCTAAATTGTATTTATAAAATAATAATAGATACATTTAAGAAAATTGCATATTCCATTATATATTTAATGCATGTTTATGTGTGCATATATGATTAATCACAATTTATATTATTGTCATGTATTTATTTTATATATAAAACATCATTTTTAATTTCCACAAGTTTATTAAAACATATTTTATTAAATCTTTTACATGAAATTAGTTCTTTCCTTAACATTTTTCTTCAAAATATTGTGTATTGATCAGTTTTAGTCTTGTAATTACTTGTTTGTTTGAGCTGAAAACCTTTCCATGACTATTGTTTCAAATCAATTATAGTTTTTTTTTATTTCTTATAATAATGCTTCATTACAAAAGTAAAAAAGTACAGTGGTATTTATCTAACACACTCCTCTCCCTCAG
Seq C2 exon
ACCAACAGAACTTCAACGTTTCTGTGGAGAACATGCTGACCCGTTGCCTGGATAACCAGCAGAGTTGGCGCGTCCTAAATGGACATGAGGAGAAGCCGGAGGCAGAGCTTCTGATTGGCGGAGGCCTGCCATTGGTTGCTGAGCGTCACGGGGACACCCTGGTATTCCCCTGCATCCTCAGCGCCCTGCAGTGGATCAGTCAGGGTCGAGACTCAGTCCTGGCAGACGCAAACAAACACACAATACCTGTCAAGCCTAGCATAAACGCTAAAGCTGCGCCGCTTCGAGAGGCCCAGAACATACACGTCCTCATCACAGGCAGCTTACACTTGGTGGGAGGAGCCTTAAAACACTTGGATCCCGCTTTAAACTCTTAATACACTCTTCTCCAGTGTCAGACTTGCAGAAAGTGCGCCACCTAGTGCCTAAAATCTTACTCACAGCTCAGTATTACTGCTAATCATCAAGGTGTTTTTCTAAAATTCCTACTTTTATAGTACGTCGGACCAATTTGGTTTTGTAAAAGGCACATCAATCCAAATCTACTTGAGCTGCTCGTGTTTACTTGGATTTGACGTACTTGGTGCATTGAGTTCATATTTCTGTTTCATTTTTTACACTACAGTTTGTTTTAAACCAGTGTCTTTCTCTAAAATGACAGTGAGAGGTTGCCTGTCTGTCAGTGTTTGTGGTATTTTTATTATTGCACTGATGAATAATGTGCCATATATAAAACACTGTTCTCTAATTATGTAGTAATATATGATTTCTTACTCATGCATGGGGAAATTTGCCTTTATACATGCAAAAAGATGATGTTCAGTGCATGTAAACACTGAGGTTTCCACATTTGTTCATGCCACATAAACACGTTGAATTTGTTGTCTATATATATAATATACATCAAATGATTTTTCAATGAAATCTGACTTTTTACATTTGTAATGACACTGTTTTGTAGTATTTTATGTTCTAATAAGTGTATAGCTCAGGGGTGTCCAATCTCAGTCGTGGAGGGCCGGTGCCCTGCTGAGTTTAGCTCCAACTTGCCTCAACACACCTGCCAGGAAGTTTCTAGTGTATCGAGCTAGAGCTTGATTAGCTGCTTTAGGTGTGTTTGATAAGGGTTGGAGATGAACTCTCCAGGACACCGGCCCTCCAGGACTGAGTTTGGACACCCCTGGTATAGATTAAATTAAAATGGGTTTTTTGAGTATGTTACAACACTTATTATGGGTTGTTTTTGTCATCTGTGAAAGACTGGAGGATTAATATAAAATCTAATGTGAGTAAATATTGGTTTGGATCAATAAAATTGATACCGCTCTTGTCTTAAAGTGTCATAAGGTGCTATTAAAATGTTCCAGGTACTGTACATACCAGATTAAAAATTATATGAAAATATGTAAGAAGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809:ENSDART00000141607:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0287516=Mur_ligase_C=PD(18.4=69.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACATCACAGAGGCCATCGC
R:
TGCCTGTGATGAGGACGTGTA
Band lengths:
356-1480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]