GgaINT1013436 @ galGal4
Intron Retention
Gene
ENSGALG00000005051 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr17:4892549-4893107:-
Coord C1 exon
chr17:4893041-4893107
Coord A exon
chr17:4892977-4893040
Coord C2 exon
chr17:4892549-4892976
Length
64 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCCACCCCACTCCCCCCAGCAG
3' ss Score
6.16
Exon sequences
Seq C1 exon
CCCTGCCACTTTGACTACGCCGTCTTCTGCCCCAACTTCACAGAGGTGTCGGTGGCTGCTAACTCAG
Seq A exon
GTGAGTACCGGGCTCTGGGGGTGGCCCCTCCACCCCATCCCCAAACCCACCCCACTCCCCCCAG
Seq C2 exon
CAGACCAACAAAACTTCAACGTGACCCTGGAGAACGCCCTCACGCGCTGTGTGGAGAACCAGAAGACGTGGACGCGGCTGATGGAGGAGAAGGGGGGCCCATGGCTGCCGGCCCCCCTGGAGGTGGGGGGGCTGCTGCAACCGGACCCCCTGCGGGGAGCCCTGCTCCTGGTGCCCCCGGCCGAGCGGCCGCTCAACTCCACCTCCCTCGTCTTCCCCTGCATTTCCCACGCGCTGCAGTGGATCACGCAGGGCCGGGACCCCCACCTGCCCCTGCCTGCCTCCAAAGTGGGGGCTCACCCGCACCCTGTGGCCACCAGTGGGGCTGTGCTGCTGCAGGAGGCGGCCGCCATCCGTGTCCTTGTCACCGGCAGCCTGCACCTGGTTGGGGGGGTCCTCAAGCTGCTGGACCCCACGCTGTCCCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005051:ENSGALT00000008101:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0287516=Mur_ligase_C=PD(21.1=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACTACGCCGTCTTCTGC
R:
CGTCCACGTCTTCTGGTTCTC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]