MmuINT0065772 @ mm9
Intron Retention
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32538129-32540336:-
Coord C1 exon
chr2:32540270-32540336
Coord A exon
chr2:32538989-32540269
Coord C2 exon
chr2:32538129-32538988
Length
1281 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTGGTTCTGGACCCCACAGACC
3' ss Score
7.57
Exon sequences
Seq C1 exon
CCCTGCCAGTTTGACTACGCTGTCTTCTGCCCCAACGTGACAGAGGTTTCATCCATAGGAAATGCAG
Seq A exon
GTGAGAGGGGGCAGATGGTATGGCTAATGCCAGGCACCCATGGCAGACTGCTCAGTGAGGAACAGGGACTTCCAAAGCATGCTAGGAGACAGCGGCTTTTGGTTTTTAAGATTTATTTTTATTGTTTGTGTGTGTCTGAGTGCCCAGCTTTGTGGAGGCCAGAAGTCATTAGATCCCCTGGAAGTGGGGTTAAGATGGTGGTGAGCCACCATGTGGGTACTAGGAGCTGAACCCCGGTTCTCTGCAAGAGCAGCAAGGGATGTTTAACAACTCAGTCACGTCACCAGCCCCAGGGTATGTAGATTTTATTGTAGAAACACCTTTTGGTACATTTTCAAAGTTATGGCATGTAGTCACAGCACTGTGAAAGAATTATCAGGTATAGCATTTTTTTAAAGGGCAGGTTACAGCCCACTGACACCTACTGAAATCAGCTCAGTGAGACTCAACTAAGATTTATTGACTGGAAGAGAATAGAAAACCCCAGTGTGCGCTGCACGAAGATGGGCAGGTACTGCCTGCTGAAGACTCAGCTCTGGGTCCCTATGGAAGAGTGTAGAACTAGCTTGCAGTGTGAAGTACGTTTTTTGTTTGTTTGTTTGTTTGTTTTTGTTTTTGTTTTTTGAGAAAGGCAGGGTTTCTCTGTATAGCTCTAGCTGTCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCAGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTTAAAAGCTGTTTTTTTATTACATTAATTAATTTGGGTTGGGGCACGTGGGTGAAGGCCAGAGGACAACCTGGGGGAGTCAGTTCTCTCCTGGCGCCATGTGGGTCGTGGGCCATGGGGATTATATATAGGCTGCCAGGCTTGGTGGCAAGCACCCCTCACACTAAACCATCTCACTGACTCCCAGAATGCTTTTTGTATGCATTGTATTTTAAAAGCGTGTGTGTGAACCATGCAGATAGACCTCCAGGTTCCACATTGGACCAACTGGGGAGATCTGGGACCTGTGTCTTTAACAGGCTTCCTGGGAAACACTCATGCCCACACGTGAGGGACCCCAGGGGACAGTTTGTAAAGGTGAGCGTGCTTCCCATGACAGTGAGCAGGTTGCACTGGTCACAGTCCATCGTGCAGACAGCCAGCAGTCTGGTGAAGTTGTGCTTGTAAGGGTTAAGCAGATGCTCACCGTGCTCCCTTTCCCTTCCCCCTCCACTGACATGCCTGGTTCTGGACCCCACAG
Seq C2 exon
ACCAGCAGAACTTCACTGTGACTCTGGACCAGGTGCTGCTCCGCTGCCTCCAACACCAGCAGCATTGGAACGGCCTGGCTGAGAAACAGGCCAGCTCCAACCTCTGGAGCAGCTGCGGCCCAGACCCTGCTGGGCCAGGCTCCCTGCTGCTGGCCCCGCACCCACCTCAGCCTACTAGGACGAGCTCCCTCGTTTTCAGCTGCATCTCCCACGCCTTGCTGTGGATCAGCCAAGGCCGGGATCCCATCTTTCAGCCCCAGAGCCTTCCAAGGAATCTTCTCAACCACCCCACAGCCAACAGCGGGGCCAGCATTCTCCGTGAGGCTGCTGCCATCCATGTACTGGTTACAGGAAGCCTGCACCTGGTGGGCGGGGTTCTGAAACTGCTGGATCCCTCTATGTCCCAGTAGCCAAGGACCATCCTACATCGGTCTGCCTTTCCACAGACTCTTATACTCAGTGCCTTGTGATTTCTGCTCTCAGATTTTTTCGGACTGGCCCAGGGTCCTGGGCTCTTGGTAGAGTGTAGGGATGGGAGAGGCTCTCTGTACCTCGGCCTCTCCTTCCTCTGGCAGAGACAGCAGGGTGCTTCCCAGAGTCCCCACCATCGTAGCAGGCTTTCAGCCTGGCCCATCTCCCTGCTGCCTCCAGGCTCAGGTCCAGCTTACTGTTGCAGCTGCCTGAGCAGCCTGGATCCTGCCTGAGGTTAGACCAGAGACCTCCTCCTCCCTCCCAATGCTTTCTGGCAAAAGAGAGGGCCCTTGCCTGGCATTTGGGGACTGTGTTGCTGGAACTAATTGAAGCTTTTAAACCCTTTTATTTTTTATTTTTTGTAAATAAATGACAAAACTTTTGATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566-Fpgs:NM_010236:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0287516=Mur_ligase_C=PD(11.2=39.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCAGTTTGACTACGCTG
R:
GATTCCTTGGAAGGCTCTGGG
Band lengths:
342-1623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: