DreINT0074378 @ danRer10
Intron Retention
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31880725-31882358:-
Coord C1 exon
chr5:31882241-31882358
Coord A exon
chr5:31880856-31882240
Coord C2 exon
chr5:31880725-31880855
Length
1385 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
ATTTTGCTTTTTAAATTCAGGTT
3' ss Score
8
Exon sequences
Seq C1 exon
ACTAAAGGGTGCGCTGTTGTTCATCACTATAGCCTTAATAGGAACTGGCTGGGCCTTTGTCAAGCATATTCTTTCAGATAAAGACAAGAAGGTTTTCATGATCGTCATTCCTCTACAG
Seq A exon
GTGCAGTGTTTTTTTTTTTTGTTTGTTTTTTTTATGACTTAAAAACTTTTTTTCAGTACCGCATCTGGTTGTGTGTTATCAAAATGCTCTGTGTGAAATATGAATTCAAAATCCCTAGTTGTTGAAACTATATATAGGTCACAAAACACCCTGCAGGTGAATTATGTCATTTTGTAGAATTACAAAATAAAGCATGTTTTAAAACACTGCAAATAGCAGAGCTTTCTGTTGAGTATAAAGTTTGCTAGTTTTGGTCTCAATTTGAACAAATTCCTCCATCCTGAAAATTATTACCTGTGTTTATCCTTGGTTTACACATTGACTAGTCTTCAAATTTGGCTTTCACTTTTATAACCAAACCTTAATTTCTTTTGTGACACAACAAATTTGTCTTATTCCCACATTCACTTGCCTGCCACACTAGCCAATTTTCAAACCTTTGCTATTGATTGATATGTGATTCATAAATTTAATTGAGCTGCTCTTTGCGTAAAATAGACCCATAGTAGTCAATGTGCTGTAAACTAGGAGAATTTTTGAAAAAAATGGTCTATTCTTATGGAGCCAGATCAGTCTCAAAAATAATACATTTACAAAATAGAATTCATACAACCACAACACAATTCACATTTACAAAATCCAATTCATTCAAGTTCAAAACGTGTTTCGTTAATTTTACAAAAACAAATCATAAATTTAAAATATGATTTAAAAAAAAAAAACAATTCGCAAATTCAAAACACAATTCAAAAATATACAAGTCTAATTTGCATGTTCAAAACACAATTCAAAATAGACAAATCAAATTTGCAAATTTAAAACACGAATCAAAGTGCACAAATCTATTTCATAAGCTCAAAACACGATTCATAAATACACAAATCTAATTCACAAATTAAATGCATGATTCAAAAATGCACAAATCCAATTTGTAACTTCAAAACACGATTTTTAAATGCACAAATCTAATTTGTAAGTTCAAAAAACGGTTCATAAATAGACAGATCTAATTTTTTTTTAGCTAAACACAATTCATAAATGCACAAATCCAATTTGTAAGTTCAAAACATGATTCATAAATACACTAATACACCAATACAATTCATCTGGTGAAGATTTTTACTTGTGAATTGTGTGTTGTATTTATGAAAGTGTTTTGGATGTACAAATTAGATTATGTAAATGTGAATTGTGCTGTGCATGTCTATGTCTATGTCATGTGCAATTTTATTTATAAATGTTTATTTTTGAGATCTAACTCCATAATTCTTCACATTCACCACATTTTGCAAGGTATTAGACGATGGCTGCAATTTTTTTTTTAAATATATATTTTTCCATTCTAATTTTAACAGTTATAATTTGATTTTGCTTTTTAAATTCAG
Seq C2 exon
GTTCTGGCCAATGTGGCATACATTATTATCGAGTCCACAGAGGAGGGCTCCAGTGAGTATGGTTTGTGGATGGAGATCTTGTTTCTGGTGGATCTGCTCTGCTGCGGTGCTATTCTGTTTCCTGTGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200:ENSDART00000168870:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(13.2=100),PF069126=DUF1275=FE(22.5=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(14.5=100),PF069126=DUF1275=FE(24.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAAGGGTGCGCTGTTGTT
R:
ACCACAGGAAACAGAATAGCACC
Band lengths:
246-1631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]