HsaINT0071242 @ hg38
Intron Retention
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:HGNC:17830]
Coordinates
chr9:130101106-130104550:+
Coord C1 exon
chr9:130101106-130101223
Coord A exon
chr9:130101224-130104419
Coord C2 exon
chr9:130104420-130104550
Length
3196 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GCAACTTCTCATGTCTGTAGGTC
3' ss Score
7.86
Exon sequences
Seq C1 exon
TTTGAAAGGGGCGCTACTCTTCATCACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGCACATCCTTTCTGATAAAGACAAAAAGATCTTCATGATTGTCATTCCACTCCAG
Seq A exon
GTAAAAGAACCCTCATCCCATTTGTCACTTCCTTTCTTGGCGCTTAGCAGGGCTCAGCTCCAAGCCTGTATGGGAAGAGGGAGTCACCTCACCCTGAAACCCCAGCTTCTGCTAGTGGAGGTTGAAGACTGAGATTCTCTTTCTGAATTCTGAACAGACTTCAGGTCATTGCACTGGGAGATGCTTGGGCATCAGTCAGCCACTGGCCTTTGGGGGCCTAGATTTTGAGTAGAGAGCTGCTGACAGTGACAGGGAGACACACAGTAACACACAGTACTGTTTTCTCTTCTGCATCATTTGCTTCATAACTAAATGGTGCCCTTGGCAAGGAAGCTCAGAGATGTAGTGATTTTATTAACAAAGTATTTTAAAACCGTGAACTACACCAGTGAGTTTCCACAGGTAGAATATGGTAGTAGACGTGAGGGGCAAACATTTCCTAAATCCTTACCATGTTTGGGGCCGAGGGCCAAGGCCAGCCTTACAAGGCTGTGAGTCTTTTGCGGGAGGAGCCTTGTCTTACTGGAAGCAGAACTTGGATGTAAAGAACTTACAATGAACAGAGAGGTTTTAGCAGGGATGCACAGCTACCCTGCTCTGCTTGACCAGACAGCGTCTGTTTGACAGAGTTGTCCCTGTGAACTTTTCTCACATTTTGGAGCACAAAGTAAATGTGGAAGGTTGGGGGTGGAAGGGGACAACTCCTGAGGCACCCAGATCAGCCGTCCCAACTCTGGCAGAGTTTGCAGCAGAGCTCCTCTCGGAGTTCTAACAGACCTCATCCACCCTTACGTTCAATAATGAGGAACATGTGTTGACATCAAATGAATGGGACAGGCCAGTTGCTCTGTGTTTCCAAGGAGAGAATAAGCACTCAAGTTGGAAGGATCAAGGAGGGCTTTGTGACAGAGATAGGGCTGGCCTGGGTGTTGAAGGAAAGGAATGTGACAGAGGCAGTAAATACACATGACCCTGCTGTCTGCTAAGCAAAACATGCTGAGGGACTGTGCCGGTCTTTCGGCTGTCGAGCCACCGTGGTCACTTCTTCAGCCAGACTGAGTCCTACAGCCTGCCGAGGTCTCGGAGTTGTGAATGACGGAGACTGGGTTGTCACCCGGCTGCGTGTGCCTCTTCCCTTTAGTAGAGTCCCTCATCCCTCTAGAGTCTCCCCCCACCAGCCTGAACCAGGCTGTCGTGGGGCATAGCCTTCCAGGAAGCCCGTCCTGGGCTTCCCTGAAAGACAGACACACAGAGTTCCATGGAATGTCAGTCTGAGAAGATAAGGACATTTAACAAATTAAGAAAGTCATGAGTATTTAGACAATAGAACTAGTCTGGGAGGGCCTTAAATGTCAGCCTGAAAAGTTAAAACTGCTTCCTTTTGGCCATGGGCAGTGACAGAAAGTTTCTAAGTAAGGAGTAGATGATGTCCCTGCAAAATGGTGTTTCAGGAACACTCTTGGCACGTTGTTCAACACTGGGAACATTCTGTCTCTCATGCAGTGTGTGAATTAAGGACAAAATGGAATTTTGAATTTAAGATGTGAAAGCCTTTGTTTTCTACTTTGTCCTCTTACTTTTAGACAGGGTCTCACTCTGTCGCCCGGGCTGGAGTACAGTGGTGATCATGGCTCACTGCAGCCCTAAACTCCTGGGCTCAGGCGATCCTCCTGCCTCAGTCTCCCGAGTAGCTGAGACCACAGACGTACACCATCACACCTGACTAATTTTTAATTTTTTTTTTTTAATTAGAGGCCGTGTCTCACTATTTTGCCCAGGCTGGTGTCAAACTCCTGGGCTCAAGCAATCCTTCTGCCTTGGCTCCCCAAATTTCTGGGATTATGGGTATGAGCCACCGCACCCAGCCCTACTTTGTCTTTTTAGATGGAGCCACAGATGCTAGTGTTTTGGATAGACAGGGCTTCACGAGCAGTGTGGGACAGGGAAGGACCCAGAAGCTGGGGGTCATTGGAGAGGCTGAAATTTCAGATAATTTTTGCATTAGTTTTAAATGAAATTTCGGATAATTTGATTCTAAGTCCTGTATAGAAAGAGAAATTAAACTTAGAGACTTCCTAAATAATAGCACTACAGATTTTACATGCAAAGTGTGGAGGATTACCTTTTACAGCAAGTCAGGCAGAGATTTGGGACCAGGGACTTCTCATGGGGTATATAGGTGGAATGATAACCTCTGCATCCATTCCCAGTGGTAATCTTCAAAAGGATGTATTATAAGTGGTAAATTTCCCTTATGCTCTGTGGCATCTCAGTTTAGCCAGTGGAAAGACTTTTTATAAAGACTTATGCTAAGAGCCTAATAACGGGCCTGAGTACAGAGCTTAATAGTGGGCCTGAGTATATGAGGCTGTAGGGCTGGAATCAGCCATGCTCACCCTCTGGTCTCTGAAAACACAGTTCCATTGTCTGGCACTTAGATGAGTTATTGTCACTGAGCACCATGGCCTGAAAAGTATGGGCATTGTGGCTAAATAGGGTGTTAAGTGCCACCTATCCAGCAGTCCAGCACCTGAGTGACTCCACTGGGTTTGGGGTACCTGAAAAGCAAAGTGTCCCTGTTATCTACTGCTGCATAACAAATCACCCCAAAACTCAGCGACTTAAAACGACAATAACCCGTCATTCTCTCTCTCAGTTTCTGTGGGTTAGGAATTCAAGAGTGGCTAGCTGGGTAGGTCTGACTTGGGTCTTGTGGTCATAGTCACACCATGGCTGGGAGCATCTTGAAGTCTCCACTCGCATCTGTCTTCTGGGCTGAGAAGCTTGCTCAGGTGGGGACTGGGACAGCCGGGGCTCCTGGGGGGGCCTTTCCATCTCTGCATGGTCTGTACAGCAGGGTAGTTTCAGGGTAGCCAGACTTCTTACAAGAAGGCTTAGGGCTCCAAAGGTCCCAAGAGAGCTGGGTGGAAGCTTTATCTACCTTGGAAATCACACAGCAGTACTTCCATCTTACTGTATTAGAGCAATTACGGCCTGTGCAGATTCAGGGGGGTGGCATAGAGACTCTCCTTGATAGCGGAGTGGCAGAGTTCTGGAAGAGCACGTGGGACTGGAAAGAATGCTGTGGTCGCAGATCGTGGGTCTGGAGGCCAAGGTGTACACCCCACATTGGGGCTGCTAGCATCATAACAGTCCACCCATGCTTTGGGGCCTCAGCAACTTCTCATGTCTGTAG
Seq C2 exon
GTCCTGGCAAATGTAGCCTACATCATCATAGAGTCCACCGAGGAGGGCACGACTGAATATGGCTTGTGGAAGGACTCTCTATTTCTGGTCGACCTGTTGTGTTGTGGTGCCATCCTCTTCCCAGTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358:ENST00000493417:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(13.4=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development