Special

MmuINT0072807 @ mm9

Intron Retention

Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31041009-31044333:+
Coord C1 exon
chr2:31041009-31041126
Coord A exon
chr2:31041127-31044202
Coord C2 exon
chr2:31044203-31044333
Length
3076 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTTGGGTCTCATGCCTGTAGGTC
3' ss Score
8.76
Exon sequences
Seq C1 exon
GCTAAAGGGCGCACTCCTGTTCATCACCATCGCCCTCATCGGCACTGGCTGGGCCTTCATCAAGCACATCCTGTCTGATAAAGACAAGAAGATCTTCATGATTGTCATCCCGCTCCAG
Seq A exon
GTACAGGAACTGTGCCTACCTTGTCAGTCCTCCCTGGCTCTGGGCAGGGCTCAGCTCCAGGCCTCTCTGCAGGAAGTCAGCTCACTTGGGAACCTGAACTGATATCATTGTGGGCTGCCGATGGGGGCTCCTTTTCTGACTGCTGACAGACCTAGGCTTCAGGTGTGTGCTGGCAGCCCTGGTGGCCTCTTGTCTTCAGACAGACTGGGATGCCCAGATTGTGGTTAGAAAGCTGCAGAGAACTGAAGGAAGAATGCCCCTGCTTTCTGCATCAGATGCCTCTAACATCAGTGAGGTTAATGAGTAGGCCCAAGTGGGTGCCCTATAGTATTTTGGAACTGAGTGTCACCAGTGAGTTTTTTCCTGCAAGGTACAGTACAAGAGTGGCCCCATAGGGCTAACATTAATTACATCACCTGTGTTTGGAGGCCATGCTCTGAGGCCTGACTGACTAGCTCATAGGTCTTCAGAGAAGACCCATGGCTTATCTTACACCAACAGTCTGCAAGGTAGCAGAGCCTGGAGCTGAGGGAGGGCACCACAGCTATAGGTACAGCTTCCCAGCTGTCTGGCCACAGCTATGCCTTTCTTTGATGAGGTCAGCTCCTGTTCAGACTGCAACATGGGTGTGGCTGGCAGGAGAGGAAGGGAGAGTGGAACTTCTAGGTCACGTCATCTCCGGGGTTTGATTGGCTGCTTGGCAGCATTCAGCAAGCAGGTGGACTCGCACCAAACCAGTGACATAGACCAGTTGGTGTAGGTTTTCGACGAGGAATAATCGCTCAGAATGATTTGGAAGAGCCATATAATGGAGATGGACTTGGTTGGATGTTTAAGAAAAGGAGTGTAGCCGAGGAATTGCCACAAATACCTGTGACACTGCTGTCAGAGGAAACACAAAGGCTGCAGTCTTCTGGTGACCAAACCACCTCGGCCACTTCTAGGCAGATGGAGTTCCATAACCTGCAGTGGAGGCCTCCGAGCATGGCCTCCAAACACAGGGCATCCGTGACAGAACCTGAGCTCTCTTTCCAACTGTGGGAATTGCTGGTAGTGTCCCTTCTGACAGATTTGGGCTTTCGGTCTGTTGGCTCCTCCCCAGCCTGAGCTGGGGTATGATGGAGCCCTCTGTCCTGCTCAATCCTTAGAATGGTGAACACACAAGGCCACACCAAATGTTCCCCTAAGGAAATATGGATGTTTGAAACTAAAGATAATGGGACTGCTCTGGGAAGGGCTTGACCAAAGTCTAAGCAACTTCCTTTTGCATTGGGGAGTGCAGGAAAGTTTCTATTCCTCCTCTTCTTCCTCCTCCTCTCCCTCCTCCTTTCCTTTGTTTTTCTCATGGTGCTTGGCATGAAACCCAGGGCCTTGAACAGACAAGGCAGGCGCTCTGCTGAGCTCCCACCCAAAGCAGGAGAGAGTAACATGGTATTGAAGAGCACTATAGGGAGTGGCTCAGCACTGCTTCTGGGACAGTCTATCTTTCATGCAGACTGCAAATTGAGGTCCAGTTGGAATTGGGCTTTTCATTTCTAGACTAGGCTAGCAAGCCCAGCCATCATCCTGTTTCCATCCCACACCGAGCTGAGCTAGGGTTATAATTGTGTTCAGGACACCTGGCTTCTTAGGTGGATGCTGGGATCTGACCTGAGCCTCATGATTGCTTGGCAAGCACACTTAACTGCTGTACTGTCTCTCCAGCCCTAACATGCCTCATCTTTATTTCTGCATCATAGCTCATGGTATTCACTAAAAGGTTAATACCGTAAATCATAAACCTGCTTGATGCACAGTGGGGTCTCATTTAAGTCACTTGAAAAATTGTCTATAGTCTGCTAAGAGCCCAAGGACAGGGCTGAAAACACAAGACAAAGCCTTACTGTGGAATTAGAAACAAGGCAAGGAAGCAGATGAGCCTCAGGAGGCCCTAGGCTAGCTAGCCCCTTCCTGGACCCCCGTGGTCTCTGAAGTCTGCACTTCTTGCCACTCTGACCTCTAATCTCGATATCAGCTACTTAGAATTATTGTCCCTGAGGACAAAGAATTCTCAGGAAAAACGGAGCCTGAGGAGTGTTGACATCCTAGCTGTGAGGGTTGTAAAGTGCCACCTGTCAGTAGCTTGGGTGCCCCAGAGTAAAGTGTTTCCATTACCCACTGCTACGTGCCACCCCAAACTTGATGATAGCAGGAAACACTAGCAGGAAATCTCAGTTTCTGTGGGCTAGGGGTCTTGATTGCGTAGGTTTGACCTGATTGCAGTTTGTTGGTTACTAGAGTCTGGGTTTATTATAGTTTTTTTTTTTTTTAAAGAAAAAAAGAAAGCCAGATAAATTCTTCTTTTAAAAAAAAAGATTTATAGCCAGGCAGTGGTGGCGCGCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGATGCATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACTGCACAGAGAAACTGGAAAAACCAAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGATTTATTTATTTATTTATGTGAGTACACTGTTGCTGTCTTCATATACACCAGAGGGGATCACATCCCATTCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAACTGAACTCAGGACCTTTGGAAGAGCTCTTAACCACTTAGCCATCTCTCCAGCTCTGAGTTATATAGTCTTCATGGAGTCTGTGTCCTAGGCTGGGAAGACCTGATCAGATAGTGAGGCTCCTTGGGTGTCTGTTCTTCGCATGGTTTCTCCATGGCAGCTTAAGGGAGCCTTAGAAGAAGACTTGAGGCTCTGCAGATCCAGCAAGGTGGTTAGGTGCGGGGCAGGGCAGAAGGAATCTATACCCACTTTGGAAATCACATGGCAATGTAGATAGTTCTCAGGATCCACAGGTTCAGGGACCAGCAAGCTAGGAGACAAGGCTATCAGGGAGCTTGTGGGTGCTGCCACAGGCCCAGCACAGGTGAGGTGGGGTGACATCCCACTGGGGCCACTGTCATAACAGCACTCATACTTTGGGTCTCATGCCTGTAG
Seq C2 exon
GTCCTGGCGAATGTGGCCTACATCATCATAGAGTCCACTGAGGAGGGCACAACTGAGTATGGCCTATGGAAGGACTCTCTGTTCCTGGTTGACTTGCTTTGCTGTGGCGCCATCCTCTTCCCAGTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-Gpr107:NM_178760:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF068148=Lung_7-TM_R=FE(13.4=100)

							
A:
NA

							
C2:
PF068148=Lung_7-TM_R=FE(14.7=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000056739





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:130101224-130104419 
LOW PSI
HsaINT0071242
(GPR107)
Human
(hg19)
chr9:132863503-132866698 
LOW PSI
HsaINT0071242
(GPR107)
Rat
(rn6)
chr3:10659815-10661853 
LOW PSI
RnoINT0066894
(Gpr107)
Cow
(bosTau6)
chr11:100458686-100460831 
LOW PSI
BtaINT0068388
(GPR107)
Chicken
(galGal4)
chr17:5835439-5836433 
ALTERNATIVE
GgaINT0124993
(GPR107)
Chicken
(galGal3)
chr17:6421949-6422943 
LOW PSI
GgaINT0124993
(GPR107)
Zebrafish
(danRer10)
chr5:31880856-31882240 
LOW PSI
DreINT0074378
(gpr107)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"