RnoINT0066894 @ rn6
Intron Retention
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10659684-10661971:-
Coord C1 exon
chr3:10661854-10661971
Coord A exon
chr3:10659815-10661853
Coord C2 exon
chr3:10659684-10659814
Length
2039 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TGGGCTCTCATGCCCTATAGGTA
3' ss Score
8.87
Exon sequences
Seq C1 exon
GCTGAAGGGTGCACTGCTGTTCATCACCATCGCCCTCATTGGCACTGGCTGGGCCTTCATCAAGCACATCCTGTCTGATAAGGACAAGAAGATCTTCATGATTGTCATTCCGCTCCAG
Seq A exon
GTACGGAGGACAACCGGCTGCCGGGCAGGGCTGCCTGGTCGGTCCTTCCTGGCTCTGGGCAGGGAGCCACTCACTGGGAAACCAGGCAGAGGGGGGCTCCTTTTCTGACACTGACAGACCTAGGCTTTGGGTGTGTGCTGGCCTGGATGCCTAGATTGTAGCTAGAGAGCTGCAGAGAACGGAAGGACAAGTGTCGCCATGCTTTCTGCATTAGATGCCTTTTACAAAGAGGTTCGGTTAGTGAGTTGGCCCGGATGTCCTGTAATATTTTAGAACCGAGTGGCACCAGTGAATTTTCCTGCAAGGTGGAGTCCGAGAGTGGCCCCACAGGGCTAGCATTGATCCCATCACCCTGTATTTGGAGGCCATGCTCTGCGCCCGACTAACTAGCTCATCTTATATCAGCAGTCTACAAAGTAGCAGAGACTGGAGCGGAGGGAGGGCACCACAGCCAGGTACGTCTTCCAGGCTGCCTGGCCACAGCCATGCCTTTCTTTGATTAAGTCAGCTCCCATTTAGACAGCAGCATGGCTGTGAAGCAGAAGAGGAAGGGAAAGTGAAACTTCTAGGTCACATCATCTCCAGGGATTGAGTGGCTGCTGGACAGCATCGAGGGCTAGCACCAGACCATTGACATAGACCAGCTGCTAGAGGTTTTCAATGAGGAAATCATCACTCAGAATGATCTGGAAGAGCCTTGTAATGGAGATAGGACATGGTTGGATGTTTAAGAAAAGGAATGTGGCAGAGGAGTAGCCATGAATACCTGTGACACTGCTGTCAGAGGAAACACACAAGCTGAGGTCTTCTGGTGACCAAACCAGCATGGCCATCTCTAGGCAGATGGAGTTCCATAACCTGCCGTGGAGGCCTCAGAACACGGCCTCCAACCACAGGGCATAGGGGACAGAACCTGAGCTCTCCTTCCAAGTGTGGGGTACTGGTCTCTTGGTTCCTCCACAGCCTGAGCTGGGCTATGACAGAGAATCCTCTGTCCTGCTCACTCCTTTGAATGTTGAACACACAAGGCCACACTGAATGCTCCCCTGAGGAGATCTGGATGTTTAAAGCTAAAGATAAGGAAGTTATTTAGACAATGGGACTGCTTTGGGAAGGGCTTGACCAAAGTCTAAGCAACTTCCTTTTGCCATGAGGAGTATCAGAAAGTTCCCCCTCTTCTCGTCCTTCTCTTCTTCCTCTTCTTCCTCCTCCTTTTTCCTTTGTTTTTCTCCTGGTGCTTGGCATGAAACCCAGGACCTTGAACAGGCAAGGCAGGCACTCAGCTGAGCCCTCCCCTGAAGCAGGAGTGAGTAACGTGGTGCTGGAGAGCACTGTGGGGAATGGCTCAGCACTGCTTCTGGAAAGTCTGTTTATCATGCAGACTGGAATTGAGGTCCAAGTGGAATTGGGGTTTGCGTTTCTAGACTAGGCCAGCAAGCCCAGCCATCATCCTGTCTCCATCCTACTCGGAGCTGAGCTGGGGTTATGATGTGTTCAGGACGCCTGCCTGCCTTGTTAAATGGATGCTGGGATCCGACCTCTGGTCCTTGGAATTGCTCGGCAAGCATGCGTAACTGACTGTTGTGCTCTCTCTCCAGCCCCAACGTACCTCATCCTTATCTCTGCATCATAGCTCATGGTAGTCACTAAAAGGAATACCATAAATCATAAACTTCCCTGATACACAGTGAGGTCTCAGTTAAATCAGTTGAAAAACTGTCCATAATCTGCAAGAGCCCAAGGACAGGGCTGAAAACACAATGTAAAGCCTTAATTAGAAACAAGACATGGAGGCAGATGAGCCTTGGTAGGACCTGTGTCCTGTGCAGTATAGGGGACCTGGGCTAGCTCTTTCGAGGACTAGGGCAGTCTCTGAAGTCTGCACTTCTTGCCACCCTGACCTCTGGTCTTGATATCAGCTACCTAGAATTATTGTCCTGAGGTTACTGCAGCCATAGGCTGGGGCTCAGCACAGGTGAGCATCCCACTTGGGCCACTGTCATAGCAGCACTCATGCTTTGGGCTCTCATGCCCTATAG
Seq C2 exon
GTACTGGCGAATGTGGCCTACATCATCATAGAGTCTACTGAGGAGGGCACAACTGAGTATGGCTTGTGGAAGGACTCTCTATTCCTGGTGGATTTGCTGTGCTGCGGCGCCATCCTCTTCCCAGTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589:ENSRNOT00000037742:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(13.4=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]