DreINT0077346 @ danRer10
Intron Retention
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58583637-58584729:+
Coord C1 exon
chr6:58583637-58583820
Coord A exon
chr6:58583821-58584618
Coord C2 exon
chr6:58584619-58584729
Length
798 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTTTATCAATATTCACGCAGATG
3' ss Score
6.58
Exon sequences
Seq C1 exon
ATCCCTGATATGTGAGTATGGAGATAACTGCACAAAGGCGCACAGTCAAGAGGAACTTCAAGAATGGCAAACAAGAGTCAGAGCTGTACGAAATAAAGCCCGAGATGCAGCCAGTCAGGGTCTACTCTCCTACCAGGACAATCTGCTGGACGAATACAGGCACAGCAAAGACAAGAAGATGATT
Seq A exon
GTAAGTACTGTAGGTCATACAGTAATCAATAATGTCAGTGCAGTGATTATCCAAATGATGTTGAACAGATTCAGGAATTTTTCACAGTACTTCCTCTAATATTTTATCTACTGGAGAAAGACTTATTTGTTTTATTTTGACTAGAATAAAAGCAGTTCTTCATTTCTTTAAAGCATTTTAAGGTCAATATTATTAGCCCCCTTAAGCAATATTAGTTTTGAATTATCTCCAGAACAAACCACTGTTATACAATGACTTGCCTAATTACCCTAACTTTACCCTAATTACCCTAGTGAAGCCTTTAAATGTCACTTTAAGCTGTATAGTAGTGTCTTGAAGAATATCTAGTCTAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAGATGAATTATTAAAACTATTATGTTTAGAAATTAGCTGTAAAAATCTTCTCTTCAGGGACTGATAATACTATACAGGGAGTCTAATAATTCAGGAGGGCTAATAATTCTGACTTATCTTATCCTTGATTTTTCATTGCTTGTTGGATGTACAGAACATTTGGTTTGTGTGTTATATAAGCTAACAGACGATGTGTTAATTCATCATATATTTATATATATATTCATATATATGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACACACACACACATATATATATATAAATTGAAGTCTTTCTAAAGCATCATAAATATTTTTTATCAATATTCACGCAG
Seq C2 exon
ATGACTGACACCATTCCTGATGTGTTCATCACCTGTGACCGAGATTTAGATGCTGTCTATGTAAGGAAAAGGGGAATACAGTGTACATGGAATTTTACCATCATATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527:ENSDART00000154393:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGATATGTGAGTATGGAGA
R:
TGATGGTAAAATTCCATGTACACTGT
Band lengths:
286-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]