MmuINT0022841 @ mm10
Intron Retention
Gene
ENSMUSG00000027580 | Helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:181239307-181239668:-
Coord C1 exon
chr2:181239485-181239668
Coord A exon
chr2:181239412-181239484
Coord C2 exon
chr2:181239307-181239411
Length
73 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
AGCCCAACTTCTCTGTGCAGATG
3' ss Score
7.76
Exon sequences
Seq C1 exon
GCCTGATCTCTGTGAGCACGGAGAGGTCTGCATCAAGGCACACTCAAAACAGGAGTTACAGGAGTGGGTTCAGCGGGCACAAGACATGGAACTGCGAGAACAGGCCGCCTGGCAGGATGGGCTGGTACCTTACCAGGCACGACTTCTAGCGGAATACCAGCGCAGCAGCAAAGAAGTATCAGTG
Seq A exon
GTAAGTGGAGACTTGTGAGTGGGTGAGGGTGGGTCCACAGCTGCAGTGCTGAAAGCCCAACTTCTCTGTGCAG
Seq C2 exon
ATGGCTGAGACCATCCGTGGAGTGTCTGTCACTTGCCACCCACCACCGGTGCATCAGGCCCAGGAGAAGATCCAGCACCAGTGGGTGTTCACCATCCACTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580:ENSMUST00000121484:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAACTGCGAGAACAGG
R:
GGATCTTCTCCTGGGCCTGAT
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types