GgaINT0011567 @ galGal3
Intron Retention
Description
NA
Coordinates
chr20:9713913-9714618:+
Coord C1 exon
chr20:9713913-9714096
Coord A exon
chr20:9714097-9714510
Coord C2 exon
chr20:9714511-9714618
Length
414 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTCTCGTGCCTCTCCCACAGATA
3' ss Score
11.3
Exon sequences
Seq C1 exon
AGCGGAGGTGTGCGAGATGGGGGACAGCTGCACCAAGGCTCACTCCAACGAGGAGCTGCAGGAGTGGATCCAGAGGGTGAATGTTGCTGCCAAGAAGAAGAAGCGGGCCATAAAGGAAGGGTTGGTGTCCTACCAGGACCGGCTCATTGCTGAATATCAGACGTGCTCCAACGAGGTGCTGATT
Seq A exon
GTAAGTCATGGGCAGTAGGGTGGGAGCAGTAGCCCCGTACATCTCCTGTGGTGTGAGAAGCATCTGGTGTGGGAAGGGAGCCTGTGGTCTGCAATGGCCTCATTGCCAGAGTTCAGCTTGGGAAGGGAGTTCGTGCTTCCCAATGGCCTCATGACCGTAGTTGAGTGAGATGCAGGAAGAGAGACATCATCCCTACATCTTCACCCCATCCAGACAGCAGCCAGGCACTAACACCTGCTCTGGATGCCTGAACGTGCTGCTCTACCCTGAGGCCTTTTGTTTCCCAAGGCTGGGAATGATGAGCAGGAGCACGTATGGATGGTCCTGCTTGGGGGATGGATAGAAAAGGGGTGGAAACGTTGCCACGGTGTGGTGGTTTTCCCTCATCCTTCTCTTCTCGTGCCTCTCCCACAG
Seq C2 exon
ATATCTGAGTATGTCGAGGGCATTACGGTGGTGTGCCAGGAGCCCCTGGATGTGCACTCGGAGGACAGGCAGCTGAAGTACCGGTGGAAGTTCAAGGTTTACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138:ENSGALT00000009906:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAGGTGTGCGAGAT
R:
GTAAACCTTGAACTTCCACCGGT
Band lengths:
286-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]