HsaINT0131694 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr20:62201857-62202221:-
Coord C1 exon
chr20:62202038-62202221
Coord A exon
chr20:62201965-62202037
Coord C2 exon
chr20:62201857-62201964
Length
73 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
AAGGCTAGACTTCCACGCAGCTG
3' ss Score
-1.76
Exon sequences
Seq C1 exon
GCCTGACCTCTGTGAGTATGGGGACGCCTGCACCAAGGCACACTCAGCACAGGAGCTGCAGGAGTGGGTCCGGCGCACGCAGGCTGTGGAGCTGCGGGGGCAGGCGGCCTGGCAGGACGGGCTGGTGCCCTACCAGGAGCGGCTGCTGGCCGAGTACCAGCGCAGCAGCAGTGAGGTCCTTGTG
Seq A exon
GTAAGTGGGCCCTGGGAGTGGGTGGGGTGGGGTGGGGTCCAGGCCTCTTGCTGAAGGCTAGACTTCCACGCAG
Seq C2 exon
CTGGCAGAGACCCTTGATGGAGTGCGTGTCACCTGCAACCAGCCCCTGATGTACCAGGCCCAGGAGAGGAAGACCCAGTACAGCTGGACGTTTGCCGTCCACTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
-PRIC285:NM_001037335:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCACACTCAGCACAGG
R:
TCCATCAAGGGTCTCTGCCAG
Band lengths:
172-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)