DreINT0078087 @ danRer10
Intron Retention
Gene
ENSDARG00000038703 | hkdc1
Description
hexokinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9801]
Coordinates
chr13:22892511-22893075:-
Coord C1 exon
chr13:22892771-22893075
Coord A exon
chr13:22892660-22892770
Coord C2 exon
chr13:22892511-22892659
Length
111 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TGTAAATTTTACTTTCACAGAAA
3' ss Score
7.9
Exon sequences
Seq C1 exon
GTACCCCAAAAGGCTCCACAAGGTGGTCCGCCATCTGGTGCCAGACTGCCATGTGCGTTTTGTGCTGTCTGAAAGTGGCAGTGCCAAAGGTGCCGCTATGGTGACCGCCGTGGCTCAGCGATTAGCCTCCCAGCGGAAAGAGATTGATGATACCCTTGCAGCTTTTGCTTTGACTTCCACACAGCTCCAGGAAGTGAAGCAGAAGATGCATGTTGAGTTGGAACGAGGCCTGAAAAAAGAAACCCATCCCACTGCTTCAGTAAAAATGCTGCCCACATATGTTTACAGGACACCAGATGGGACAG
Seq A exon
GTAATAGAAAATACCTACTTATTTATTTATTTGTTTGTTTATTTGCTTGTTTGTTTGAAGTCTAAGCATGATGATAACTGAGTAATTAGGATGTAAATTTTACTTTCACAG
Seq C2 exon
AAAGGGGAAAGTACCTTGCTTTGGATCTTGGTGGAACCAATTTCCGCGTGTTGGTGGTTAAGATTCGGACTGGCATGCGAAATTCAGTCCGGATGTACAACAAAATTTATGCCATCCCACTGGAGATTATGCAGGGCACAGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038703:ENSDART00000056523:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTAGCCTCCCAGCGGAAAG
R:
TTAACCACCAACACGCGGAAA
Band lengths:
247-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]