DreINT0083583 @ danRer10
Intron Retention
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39961613-39962333:+
Coord C1 exon
chr6:39961613-39961750
Coord A exon
chr6:39961751-39962207
Coord C2 exon
chr6:39962208-39962333
Length
457 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
TGTGTTTTTTGACTATTTAGGGG
3' ss Score
8.33
Exon sequences
Seq C1 exon
ATCCTGCTGAGGCTGAGCAAACTGTGTGTTTTGGAGGGCATCTCTGGCAAGAAGAATAAGAAACAGCAGCAGCGGCTCCTCAGGAACATGGGAGCTCACAGTGTGGTCCTCGAACTGTTGCAAATCCCTTATGAGAAG
Seq A exon
GTGCGGGTCAGCCATTGGAGGAATACATTTGGAAAATTATTCTGTGCTACTTTGAAACAAGTGTTCAGGCATACTAGTGCAACAGAATTAATCAGAGCTAATGCAGAATTAAACAGATAGCCAAAATGCACCTGTTATGTTGCATCTAACTTAGATTTGTAGACTAAATTTTGCAATTTAAATGAAATTGATCAAATTTGACTGGAAACAATCTTCTTGCTCATGTTAGTTTCAGGTTTGATGTTCACTGAGCATCAGCCTCTTATTCTTTAAGGACCATCTAGCAATTGCATACATTCCAAAACATGTAAATGATGTCAAATAAATAATATTTAGAAGGTTGTAGTAAATATCTTGTGGTCGCACTGGCTTTATATGTATACAGTACGTAAATTAATTTATAAAAAGGCATCTTATTCTTTTTCATCATGCTTGTGTGTGTTTTTTGACTATTTAG
Seq C2 exon
GGGGAGGATGTCCAGATGCAGGAGATCATGACCTTAGCACATCAGTTCCTTCAAAACTTCTGTGCTGGAAATCAGCAGAACCAGGCACTTCTACACAAACACATCAACCTGTTCCTCAACCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655:ENSDART00000149019:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.0=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCTGAGGCTGAGCAAA
R:
CCAGGGTTGAGGAACAGGTTG
Band lengths:
263-720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]