GgaINT0021967 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19094995-19096549:+
Coord C1 exon
chr12:19094995-19095132
Coord A exon
chr12:19095133-19096423
Coord C2 exon
chr12:19096424-19096549
Length
1291 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
3' ss Seq
TATTTGTCATGCAATCACAGGCT
3' ss Score
3.29
Exon sequences
Seq C1 exon
ATCCTGCTGCGGCTCAGCAAGCTGTGCGTCCAGGAGAGCGCCTCGGTCCGCAAGAGCCGCAAGCAGCAGCAGCGACTGCTGAGGAACATGGGAGCACATGCAGTTGTGCTTGAATTGCTGCAGATCCCCTATGAAAAG
Seq A exon
GTTGGGTTTCTGTACAACTACCACTTCGCTTTGTGTTAGGTTGATGGGCTTTTAATACCTCATCTGAGTCTTCCTTGTTTCTATGCAGTATCTGTATGACGGCCATTTCGGGAATACAAGGGAGCTTGGTCCCCTGTAGGGTACATCAGCAGATCTGTCCAGTAGTTACACACAGAACCCTCCTGTCTCCCAGTTACAGTCCCAGAGACCCTCTTAGGTGCAAGTTAATACCATCTGGCTAACCAGCAGAGGGCTGCAGTTCGTAATTAGACGTATCAGAGTGCCACGTATAGTGTCAGTGGTACAGGGTGAAACTCTTGGACCAGGCTGCTGTACACAGTGCACAGCACTACATTGTCCTGATGGAACACACCCTGAGTTCATTGCCCTGGTGCCCATTAGTCACTGGCGACAGGTACTTATCATTGCACAGGTGAGGGACCTTATCACATTCTACCATTTACTCTGCTGTCTTCTGTTCCAGACTCCGCAGGTTTTTGAATACCAGTAATTCTAGGCAGTAGCTTTGAATAATGTTAAGTCTCACTGTCTTGCTCCATATTTTTTAAAGAAAAAAAGTATCAGCAGAAACAGCCCCCCCGATAACTCTTGCTGCCATTCTGTCCCATACTTGTGAATATGCTACTGAACAGGCAGTGTGGAGAGGGTGTTTCACCCTTGGAAATGTACGAAACCTCTTAAGAATAAAAACAGTGATTTTCCAAACTGCATTTTTTGCCATCAGTAATCTACACTGATGTCAGAGGAAAGGCACTGGTTCCTGAACTGTGCTTGGACGCATGCATGTAGTGTGCACATTCCAGTCAATATAAATTGTACTTAACTGGTGCAGTAAGAACTTTCCATCTCCTCTTTGCCATGAACTACCTATCTGTCACTGCTAAAATGCATTTCAACAGAACGTGGCAGTTTTCCTTGGTAGCCCTAAGGTGATGATGTGTTGTGGTTTGGCCAGTGCACTTCTCTGTTCAGAAGCGTAAAAGTGACTAAAGCACGTTGCTGGCAGGCTTGGGTGTGGAGTCTTTGATTTTAAAGAATAAACTACTGTAACTTCTATTATGGTCTTTAGTTTTGATGATCTTTAGAACTGTGGAGCAGGCCAAACTCATCCCTAATGTCTGTGAACTGGGTGGAGGTTTGTTTTTCTTTGGATTGTGAGAGATACGTGACAGTTCTCTTGCAGAGCTGGAACTGGGACTCATCCAGTGCTCACCTGCAAGTGAACCTTCAGATTCTTTGTAACTCCATCGTATTTGTCATGCAATCACAG
Seq C2 exon
GCTGAAGACACGAGGATGCAGGAGATAATGAAGCTTGCACATGAGTTTTTACAGAACTTTTGTGCTGGGAACCAACAGAACCAGGCATTGCTGCACAAGCACATAAACCTGTTCCTTAACCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.0=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGTGCGTCCAGGAG
R:
CCCTGGGTTAAGGAACAGGTT
Band lengths:
247-1538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]