DreINT0083643 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35663384-35666314:-
Coord C1 exon
chr11:35666177-35666314
Coord A exon
chr11:35663510-35666176
Coord C2 exon
chr11:35663384-35663509
Length
2667 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
AACGATGTACATTTTGGCAGGGT
3' ss Score
4.06
Exon sequences
Seq C1 exon
ATCCTCCTGCGTCTCAGTAAACTGTGCGTGCAGGAAGGGCCGTCGGGGAAGAAGAGTAAGAAACAGCAGCAAAGGCTCTTGAGGAACATGGGAGCTCATTCAGTGGTGCTGGAGCTTCTGCAGATCCCATATGAGAAG
Seq A exon
GTGCAGAGCTGAATCTTCAGTAAATTACAAACATCTAAAAAGACTAGTGATTTTTTTTTTGTCAATCTTATACAGGAAACTGGGCTATTTTTGTCTGCTTGTTGTGTGAATGACTTAAAGGAATAGTTTAATAACCAAAAATGTACATTTACTCACTATTTACCCTACCTCAAGTGTCATGCTTTTGAACACAAAATCTCTCATATTATATGGTGCAGGGCAGATTCTTTAGTGAATTACAAACATCCAAAAATACTTTTTCAATGATAATTACTCATTGTTTACTCCTAAAGTGGTTTTACTATTGATGAACACAATAAAAGATATTTTGAAGAAAGCTGAAAACCTGTAACCATTGACTTCAATAGTAGGAAATCAAATAATATGGAAGTCAATAGTTACAGATTTTACAATATACGGACAATTTAGTTTATTCAATTCACCTATTGTGCCTATTCCACCTGGGCACCCTGAGGAAACCCACGCCAACATGGGAAGAGCATGCAAACTCCACAGAGAAATGCCAGCTGGCCCAGCCGGGACTGTTCTAACTACTGCGCCATCGTGTCACCTTTTGAATAACTTTAACTAATTTTTTTAGTTAACCAACCATAAACGGTGTAGTCCAAAACATTCAAAGTCTGCTTTGATTCGTAAATGACTGACTCTTACTGATCATGTTCTTTTAAGTGAATCCAAAACATGCATGTGAGCAGTATAGTCAGATTCATGAATGAATGACTCTTACAATTTGTGTCTTTTTGGTATGTCCATAATATGCAACACAAGCTGGGTAGTCTAATTCTTAAAGGGATTACAAAGCTAAAACAAAACTAGTGTTGTCTGTTTCTTGAGTGAACGACACTTAAGAGTAGTTTATTTTTTAGTCAATAACAACACTTATTGAGTTATAAGTGTTGTTATATAAATGAATTAATGATTTACAATTAGTCATTTAGCAGACGCTTTTATCCAAAGCGACTTACAAATAAGGACAAGGAAGCAATTTACACAACTATAAGAGCAACAATGAATAAGTGCTGTAGGCAAGTTTTAGGTGTGTAAAGTCTAAAAAAGAAATCATTAGTAATGTAAGTTTTTTTTTTCTTTTTCTTTTTTGAGTAAAGTTAGTGGTTTCACCAGAGAGGCAATTGCAGATTAGGATGGAAAGTGGAGACTAAATAGTTGAGTTTTAAGTCGTTTCCTGAAGACAGCAAGTGACTCTGCCGTTCTGATGCTGTTAGGGAGTTCATTCCACCAACTGGGCAGATTGAATGCGAGAGTTCGCGAAAGTGATTTCTTCCCTCTTTGGGATGGAACCACGAGGCGACGTTCATTCACTGAACGCAAGTTTCTGGAGGGCACATAAATCTGCAGAAGTGAGAGCTAATAAGAAGGAGCAAAGCCAGAGGTCGCTTTGTCGGCAAACATCAGAGCTTTGAATTTGATGCGAGCAGCAACTGGCAGCCAGTGCAAAAGGATGAGCAGCGGAGTGACATGTGCTCTTTTAGGTTCATTAAAGACCACTCGTGCTGCTGCGTTCTGGAGCAGCTGAAGAGGTTTGATAGAGTTAGCTGGAAGTAGAGAGTTGCAGTAATCCAGTCTGGAGAGAACAAGAGCTTGAACAAGGAGTTGAGCTGCATGTTCAGATAGGAAGGGTCGGACCTTTCTGATGTTATAGAGTGCGAATCTGCAAGATCAAGCAGTTCTAGAAATATGGTCAGAGATGTTTAGTTGGTCATCAATCATTACTCCAAGGCTTTTCACCATTTTGGATGCAGTAATGGTTGCCCCATCCATCTGGATTGAAAATTTATGGTGTAGAGTTGGGTTGGCAGAAACTTCAAGCATTTCCGTTTTCGCGAGGTTAAGCTGAAGATAATGATCTCTCCTCCCGTGGGAAATGTCCGACCGGCAGGCTGAGATGCGAACTAGAACCGAGGGATCATCAGGGTAAAAAGAGAGGTATAGCTGGGTATCATCAGCATAGCAGTGGTAAAAAAAATCCATGTTTCTGGATGACTGGTCCTAGAGATGTTGTGTAGATGGAGAAGAGAAGTGGCCCAAGAACAGAGCCTTGAGGTACCCCAGCGTTTAGATACTGTAGGTTGGACACCTCTCCCCTCCAAGACACCCTGAATGACCTGTCAGAGAGGTAAGATCTGAACCATTGAATAACAGTGCCTGCAACGCCCAGTGACTCAAGCGTAGATAGCAGGATCTGGTGGTTTACAGTGTCAAAAGGAGCTGATAAATCCAGCAAGATGAGGACTGATGATTTAGAGTCTGCTTTAGCCAGTCTGAGATCTTCCACGACCGAGAGCAGGGCCGTCTCAGTTGAGTGGCCTTTCTTAAAGCCAGATTGCTAGTTGTCCATGAGTTTGTTTTGAGTAAGAAAGTCCAGGAATTAATTGGATTAATTAATCAATTAATTATTTCTCCAGAATCTTGGCCATGAATGGAAGCAGGGATACTGGTCTCTATTTAGGGATACCGGTCTTTACCGGTCTGCTGATTTAACAGCTGGAAATTTCTTATGATTTCCATCCTTAGTGAAATATTGTGTTTTTGTTTTTAGAGTTTAATTCTGATTACTTAAGGTATAATGAGCTGGTAAAACACACACACACTAACTAAAGTCTGAAAAAACGATGTACATTTTGGCAG
Seq C2 exon
GGTGAGGACGTCCGAATGCAAGAGATCATGAAACTGGCTCATGAGTTTCTTCAGAACTTCTGCGCAGGGAACCAGCAAAACCAGGCTCTGCTCCACAAACACATCAACCTGTTTCTCAACCCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.0=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]