RnoINT0076644 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140428975-140432422:+
Coord C1 exon
chr4:140428975-140429112
Coord A exon
chr4:140429113-140432296
Coord C2 exon
chr4:140432297-140432422
Length
3184 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTGTCTCTGCTCTCACACAGGCC
3' ss Score
9.95
Exon sequences
Seq C1 exon
ATTCTGATTCGACTTAGCAAGCTCTGTGTTCAAGAGAGCGCGTCGGTGAGGAAGAGCAGGAAGCAGCAGCAGCGACTGCTGAGGAACATGGGTGCCCATGCTGTGGTGCTGGAGCTGCTGCAGATCCCCTATGAGAAG
Seq A exon
GTGAGAGGGGCTCGCACCCGCAATGCTGCTCTCCAGAGTGGGATGGATTCCCACCCCCCAAACTCTTCCCAATTGGACAAAGTGGGTGAGGGCCAGTGATGTGCTTGGGACTAAAGCAAGACCAAGTCATTTATATCAGACACGTCACCTCTCCCCAGCACCTCCTGTGTTTGTCTTCTATAAAGAAAAAAGATCTCGTTCCTCCGTCACACCCGACCCTTCCTAGATGGGTTATGTATTAGCTGGTATTAGCCACCTTTGTCCGAAACAAGACAGAAACAAAGTAATCTCTACAAGTCATTGGAGGCGAGTGGAACTTGCTCTAGTCCTTGGCAGTGTCCTGTCATCTGAGTATATATTTAGACCACACCCCCAGCACCTTTGTGGTGGTGGTGGTGGCTGTTGTCGTTTTGGTTGTTTTGGTGTTTTGATTGTATTTTAGACGGGTACTGTCTTGATTTGATTTCTGTTGCTGTGATAAATCATGAACAAAGGCATGTTGGGGAAGAAAGAAGAAAGGGTTTGTTTCCTCTTACAACTCTCAGGTCACAGCCTATCACTGAAGAAAGTCAAGGCAAGAACCCAGTGCAAGAACAGATACACGACTATGAAGGAGTGCCGCTTGCTGGCTTGTTTCCCATGGCTTGACCAGCTTGGTTTTTAGTAGAATGCTGACCCTCCTGCACTCGGACAGCACTGCCCAGAGGGGGCTGTGCTCTCCCACAGTAATCACTCATCAAGAAAATGCCCCACAGACTTACCCATGAGCCAGTCTGATGGATGCCGTTCCTCAGCTCATTTTCCCTCTTTCCAGATATATCCAGATTTTGTTGAAAAGCCAGTCAGCTCAGGCAGAAGCCTAACTATTCAGCATCTATGGAGACAGACAGACTCTTGGGGAGACATTCAAACCTTGCCGTAGTAGCGAGGCTTTGTGGTTTACCCACGTGACATACTGGGACACAGAAGCCTAGGGAAGTTTGGCATGACTCTGGAGTGCTTTGTGCTCCATAACAATCCCAAAGGCTGACCCATTGGTGGAGCAGCTCCTGGAGGAAGCCCACTGCTGAGGGATTGGAGACCCACAGCACTTTGCTGCAGTCCTTCTGGTGTGTATCTCCTGTGTCCTGTAGACATGGTGATGAGACAGGGTTGCCTGAGTGAGGACCCTGTGGCCGGGAAGACTCAGGGTGGCACAGCTGTGTATGTGGCTAGCTCAGCCTCCCTATGGAGTTTGGGTCTGCTGCTTTATATTCTAGATAGTGCCACACATAGAAGCTGCCTTGTCCACCATGGAGAAGTTATGACCTTTCCCCAGCCCCCAGGAAAGCACAGGGTGAATCCTTCTGGGAAATCAGACCTATAGGTAACTTGGAGTTATCGCAGGTGTGCGTGCCGTCCACAGTTTTCCAGTATGTGGTGTGAGGAGATGGCCTTGAAGGCTACAGCTTGGTCCTTGCTTTTAATGATAGCCATTCACAGAACTGTGTTAAAGTATAGACAATTCGATTGATCTGGAGTTGGTACCTCTAAGGCAGAACTCTGTCTCTGTCTCCCACCCACCCCACCTCTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACTCACTCACTGTGAGATAGGCACAAACATCCCAGTTTGTGAGAATAGAGATTCTCACCAGGTGACATCTTGTAACACAATGTCTTCCAAGCCTGCCCGCCTTGTGAAAGTGCCCTTCAAACCCCAGTTCTTCCCCACCCTGAGCTCAGCAGATTCCTTTTTGGGTAGAAGACATGGAAGCATGCGGAACTGTTAAGGTTACTCAACCAGCATTGTCTGTCTGTCCTGAGTTCCCTGATTTCTTATACCTAGAACTTTTGCCCACAAATTAGACGTAGGCGTAGTACCCACTCCCTCCTACAAAGACCTATTTTATTTGATTACCATACCTGCTTGCTCACAACCCTCGCATTACTAGTTCCTGATAGGTTTGTCCTGCCTTCTCCCAGGGTTATTTTTTACGACAGAGTTGACAAGTTATAAATATGGGCCAGTTCCAACCCACTGCCTGCTTGTGCCCAGCATGTCAGCTCCGAATAGCTGCTGAGTTTCCAGAGAGCTGCATAAGTCCCTGCAGTGTTTGGGGTTTAGCCTCTTGACTCACCAAGCCTAAAAAAAAAATGTTTTGCCTTGCTCCTCAAATTTGATGATCTTAGTTCAAACCAGAGCCAAGAGCTAACTCGCCCTGAGCAGTGGCTGCCGAAGCATGCCAGGAAGTTCTAGGTCACACGGCTAGGTCATCGTGTCCACGTGAGCTCAGAATAAAGTAGACAAAGGCCTCCATTCCTTGCTGCCAGTCTCCTGCTAGGAGGGGGGTGATGGATACGAGATGCTTGCTTCAGGAGTCGCATGAAGTAGAATGCGAATGGTGGCTTCCACTCTCGAGAGTCTCATTCTCCTTTTACTGCCTTAAATGTTTGTGGTTGACAACTGGGCAGAATACAGTAGGCTTTACGTTTCATAACAGTTTCAAACATAGTTCTTTACTAGCACTAAAATTTTTAATATGAAATCCCAGTCTTAACTGTAGAAGTGTCACATGACCAACAACATAGGCTGCCCAGGGCAGTCCCATTTTGTAGAAGGAAAAGCTAAATCTTGGTTTACAGATAGGACTGGGGTTACAGAGAAGGCAGTAGAGTGGGTGTAGGTGTCTTGATTTATAATCTGCTGATGTTTCCTCTCTTCTCCGGCACACGGTGCTAGAAGTTACCATGTTTCACAATAGCTGTAGAACTGACGTGACCAGATGGGCGGAATGTGTACCAGCAGGGGTGAAGTGGTCTCTGCTCCACTGTCACGACCCGTTCTCGAAAGCAGGAATTTGGAAATTCCAGCCTACGACAGACAGCAGAATCCTTCTGTTAACTTTAACTCTGCAAAGTCCAAATTGTCCTATGCAAAATCTTTGTGTTAATGCTAGTAGCCAGCAGGAAAGAATTCAGTTTCATTCACAAGGCACGAGTGTGTTTTTTTCTGACTAATTCTCAGGGGGGTCTGGCAATCACCTTACTCTACCATCAGTACCCCGGGCGCACACCTTTGGATCTTACTGTGGAAGAGGGTATTAGCATGGAGCAGAAGCTTCACAGTGAATGCTTTTCCTGTCTCTGCTCTCACACAG
Seq C2 exon
GCCGAAGATACCAAGATGCAGGAGATCATGAGGCTGGCTCACGAATTTCTGCAGAATTTCTGCGCAGGCAACCAGCAGAACCAAGCTTTGCTACATAAACACATAAACCTGTTTCTCAACCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.0=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]