DreINT0085102 @ danRer10
Intron Retention
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4735134-4737675:-
Coord C1 exon
chr21:4737526-4737675
Coord A exon
chr21:4735370-4737525
Coord C2 exon
chr21:4735134-4735369
Length
2156 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
AAGAACTCTGTTGTGTTTAGGTA
3' ss Score
7.03
Exon sequences
Seq C1 exon
AGAGGGCCAGCAGTCTCCGGAGCAGTGGCAGAGGATGTATGGTCGATGTTCGGGTAATGAGGTCTATCATATCCGCCTGGGTGACAGTATGTTCTTCAGGGAGTACAACAGCAAAAGCTTTACCTATGCTGCCTTTCACGCTCACAAAAA
Seq A exon
GTAGGTGTACACCTATGAAAAATTGTACTGTCAGGATGTTTGTGTCAGGCTTCATCCTTTTGGCTTTAGACTATTAATCAAGTGTTTTCATGGTTTGAAAAATTATTATTTTGGATAAAGTGCATAAAACTGTTTAAAAATGTATTTGTTTAGATTTCTTAATGATTTATCTTAATTTAAGGATACAAATTATTAACTATAATTAGTATTAAGTGCTTAAAAAGGAAAAAGATAGAAAATCTAGAGCCATCACATGATTAGTCATAATTGATCACATCCAAAATAAAAGTTTGCATTTATACAGTATAATGAATGTGTACTCACTGTGTATAAATATTGTGTGCACAATAATAAAAAATATATGAAATACAACCCAAATATTCAAATATTGTTGAAATATTCAAACAATCTTAATCTTTTATCTTGCTGTATTGTTTTGGTTTTGTTTTCATAATAACTTATCTTACTAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATATATATATATATATATATATATATACATACATACATACATACATACATACATACATACATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCGTGTAATAACAATTAAATACTTAAATAAATATTTTTGCTTTTGCATTAAATTAAAACTCGGGAGTCTGCCCAAGTAGCCTGATCTGCCTATCTCTACACCGTTTGAAATTAAAATCAATATAAATTTCAAGATGAAAGATGCATGTAATACATATTTAAGATGTGAGTAAATGGCTGTAATTCAGTGAGGGATTGGGGTAAATATGCCATCAAAATTGTTCCCTAGAATATTCTATCATAACATAGAATACTATAACAAATAGTATCTGATATGTTATGGAAATATCCAGGAGGTTGTTATCGCAGAATAAAACCCAACAGTCTTATCTGCAACCCGACGTGAAGCAGAGCACTGTTGTATAAGACTACAAGGCTTTATTGTGCAAAAACAACCCATTCTGGATGCATTTTATCACATTTATTGCCACAAAACATAAAAAACAGACACAATATATATATATATATATATATATATATATATATATATAAAATTCAAATCCATATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATACAATTATAATCCATATATATATATATATATATATATATATATATATATAGCCTTAATATTTTATTATTTCTTTAATTAAACACAAAGCTGATGGAGTATACACCTGCCCATTATTCAGACACAAGGTGGTGCCAAAAATAAAACTGGCTAAGAAGCCTAGACTAACCTACGTATTATTCATTCACAAGACTGTGCCAAATTGTTAAAAACAGTCAAAACAATGCAGATATATGAATTTGAACATATTCATGGATGGTCAAGGTGATTCAAAGATCCTGGATGAGCCCACATTACATAGAGGTTATACCTTATAATATTGTGACTGACCAATCAGAATTGAGTGTTCCAGACAGCTATTGAATAAGCTGTGATAAAGTGAATGTATGTAAATATGTAGTTTGCCACACTTGTAATAGTTGTGCTGTAAAGGTTTGAAAAATCCACTTGGAAAAGTGCTTAAAGATCCCTTGAAGTGCTTTGAACTGGGCATTTTTATTCGATGTTCAGTGTAATTTAAACTGAAACATGAAGAGAGGGCGGGAAATAGAGTAGCTCCTCCCACTTAAAAAAAACAGCCAGTAGCGTTTTATTTCATCACAGCTCTGCCAGTGAGAGTGGTTGAGCTTAAGTCCATCAAATGGAATGAAATCAAATGTAAGCAAATGAGAAGCGTCTTAAAGGGGGCGGGACACGTCAGATAGGTTTGAAAAGAAAGGATTGATGTAAAAAAAATAGTTGATCAGGCGGAAGTGGCAAACTGCAAGCTTTACATGTTTTTTATGTTTATATCAGTTTTGAATATCCTTAAAACTGATAGTATTTTTACTACTAACATCTTTAAAAAAAACTTTATTTTAATTTCAACAGGAGCTTTATATCCAATTTGGAAAATGTGTAAGAACTCTGTTGTGTTTAG
Seq C2 exon
GTACGGTGTGTGTATGATTGGTGTGAAGAGAGAAGATAATAAGAGCATCTTGTTGAACCCTGGACCGCGACACATCATGTCTGCCAGCGACACCTGTTACTACATCAACATCACGAAAGAGGAAAACTCCGCCTTCATCTTCAGACAGGAGGAAGACCAGGGAAAGGGGCGGAGCCACTGCGACTTTTTAAACAGCCCGTCAGGACTACCTGTTCATAGCATTATTGCTAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484:ENSDART00000150936:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.126
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(45.6=100)
A:
NA
C2:
PF0349313=BK_channel_a=PD(7.9=11.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]