DreINT0093795 @ danRer10
Intron Retention
Gene
ENSDARG00000052978 | mbnl1
Description
muscleblind-like splicing regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060929-704]
Coordinates
chr2:47970103-47971711:+
Coord C1 exon
chr2:47970103-47970194
Coord A exon
chr2:47970195-47971666
Coord C2 exon
chr2:47971667-47971711
Length
1472 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
TTGTCCTTTTTTATTTTGAGGAC
3' ss Score
4.06
Exon sequences
Seq C1 exon
TTCCCATGATGCACGGCGCTTCCCCGGCCGCTGTGTCTGCAGCAACCACATCTGCCACAAGTGTTCCCTTCGCATCTGCATCAGCCAATCAG
Seq A exon
GTTTGCTCTTTTATGGCTTTTTCTCTCTATCTCTCTCTCTCACACACACACACACTGCACACACACACTCTCTCTCTATCTCTCTCTCTCTCTTTCTGTTTGAGGGATGTTTCTGAGTGCTGGGGGTCTTTTTTTACAGTGATCTCTCTCCCCCTTGTTGTACTACACGGGTTTTTTAAACGTTTATTTTATGATATTTCAAACAATATGACAAATGTTGATTTTTCCTCAAACTATAGAATGGACTATTTGATTTAATATAGATTACAGTAAGTAAATGTAAATATTAGTTCTGGGCAAAAATTAATCATGATTTATCGCATCCAAAATTTAGTTTTGACATAATTTAAGTGTGTGTACTGTGTATATTTATTTTGTGAATGTAAATGCATGCAAATATTTGAGAAAATGTTGGTTTACATTTAGATAGAAAATATATGTATATCAGGGGTTCTCAAACTCCATCCTGTAGATCCGGTGTCCTGCAGATTTTAGCTCCAAATTGCCTCAACACACCTGTAAGGATAGAGCTAGTAATAGCTGATTAGCTAGCCCAGATGTGAGCTAAAATCTGCAGGATAGCAGACCTCCAGGACCGAGTTTGAGAACCCCTGCTATCCGCATATATTTTATATGATACAAATTATACACGCATTTAAATATCAATGTAATACAATAGTTTTGTTTCCTTGTATGTGTATATATACTGTAATAAACACACATATATTATGGCAAAGCAAACTTTTATGTTGGATATAATAAATCACAATTAATCTTTGCCCAGCGCTAGTCAATATTTATATAGTTATTTATTTAAATATTATTAAGTCAAAAGTATTAGCCCCCCTTTGATTTTTTTTTTATATATATATATTTCCCAAATGAAGTTTAACAGAGCAACGACATTTTCACAGCATGTCTGATAATATTTTTTTTCTTCTAGAGAAAGTCTTATTTGTTTTATTTTTACCAAAATAAAAGCAGTTTTTAATTTTTAAAAAACCCTTTTAAGGTCTAAATTATTAGCCCCTTTAAGCTATTTTTTTTTTCCGATAGTCTACAGAACAAACACTAACATGTTTCATTAACCTAATTAACCTAGTTAATGTATAGAAGGTTCTTGAAAAATATCTAGTCAAATTATTATGTACTGTCATCATGGCAAAGATAAAATCAATCAGTTTTTAGAAATGAGTTTTTCAAACTATTATGTTTAGAAATGTGTTGAAAAAAATCTTGCCTCCATTAAAAATAAATTGGGGAAAAAAATAACAGGGGGGCTAATAATTCTGACTTCAACTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTAAATAGGGTTGTTTCTAGTATTTGTTGCTCTATTGATGATATACATCGCATTTTAATATTGTTTTTTTGTCCTTTTTTATTTTGAG
Seq C2 exon
GACTCTTCTCTATCAAAGCTGACTACCAACGAATACATGCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052978:ENSDART00000149135:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.316 A=NA C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]