DreINT0093797 @ danRer10
Intron Retention
Gene
ENSDARG00000052978 | mbnl1
Description
muscleblind-like splicing regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060929-704]
Coordinates
chr2:47973054-47975123:+
Coord C1 exon
chr2:47973054-47973125
Coord A exon
chr2:47973126-47974835
Coord C2 exon
chr2:47974836-47975123
Length
1710 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CTGTGCTTTTCCTCCCTCAGATC
3' ss Score
12.35
Exon sequences
Seq C1 exon
ATTCCAATAATATCTGCGGAGCATCTGACTAGTCACAAGTACTTGACGCAGATGTAATTCCAGTCCACAACA
Seq A exon
GTGAGTGATTTTCAGTGAGATTTTCCTGGATTTGTCTTCTGTCTGCCTGAGAAATTCAAAGTTTAATGTTGGATTTAAAGCAAAAGCGCAATCAATTTGGGTCATGATTCTCTCTCATTGACTCTTCTGTCATTCCAAACCACTTTGTGGTAATTTTTTTTACATAGAACATAAAATGAAAATGCAGATAAAGTTATTTTCCATACAACTGCAGTTCCTAATAACATGTTAAGCTTAAAAAAATGAAATACCACAAAAAAAATAATAAAAAAGGACTATGACGCAGTTTAAGTTCAATCTGATTATGCCATATGGACCACTTTTATTATGCTTTTTTGTGAGTATTTTTGTTTGCAAATGATTTTGAAAAGAACTTTCTGAGATGCAAACTTTACAAAGATATTTTAAGGAATTTAAATGACCCATTTGGGGTGTTCTGAAGTTCTTTTCTAAACAGTTGTAGTGACCATGTTCGCATGCATGAATTAAGGCTGCTCTGTGCCTGTTTGCAATTCTGTTTAAAGATCCAATGCAGGATAAAGTTTGCCATTACACTTAACACTGCACGTTTACACTAGTGCAGTGATTCCCAACAATGACGGGGGGTCGCTTGGTGATTTCCAAAAATCTAATTCATTACTATCCATAACCTACAGAAGTAGTTAATAGTTATATTAAAAAAAAAAAAACATGCAAATAAATTGCCTTTAGCCTTTCAATAATTTTTTTTCCATTGGATTGCGACCCCTGGGGTGATAACTTATATCAAAGACACAGCAATAGCGTCAGATGCAGCAGATTGATTTTATGGCACCAGCTTAAACTTTCTGACACCTTTACAGCACTAACATACATTAAAAATAAAGGCCATGACTGAATATGGAGGAATCTCTCAGAGTGATGTTCTCTAAAATTAAATGAAGAATAGACTTGGGCATATTAGTGTGTGTGTGTGTGTGTGTGTGTGCTGTTGCATGCAAGATTTGTATATTTATAACCACCTAAAAACATATAGCGGGTTGCAAGTCTCTGGAATTGTTATTTTGTGGGTTGCGGGCTGAAAAGTTTGGAAACCCCTGCACTAGTGCAAGAATGAAAACGCTTATCCAGACTGAAGTTGTTGCTGTTACATAGCCAAGTTAAATCTTTTCTGTGCCCTCACAAATGCTTTTTCACAGCTATAGCCACATCAGAATATTGCTCAGCCCTGGCAATCACCCTTAAATCGAACAATTTTCCTCCCACTTTACACTGAAAACTTAAAATGTCAAAAAAATATTAGAAATGTGACTATAATAAACAAATCTGACATTATGTGGAGGGGCCAGTTATGTCTGCCTTTATAGTTCAAATTAGTGTCCATTATCATTAGTAGCTAACCTCATCAAATCATGATGGAGCTCAATTTAACATCAAGTAAAAGATCATACTCATTTCAATGAACCTTAAATGTAAGGATTGCTGCGTGATGCAATCTCAGTTTGCATCATAAAGGCTGCATCCAGATACTATTGGCAATTTCACTGACACACAACACAACACAGAAATCCAGGGCCTCTCGAGTAGCGTCCTGTCACCGCTTTTATGCCACAGTGTTAGCGGCTGGATTGGAGACCGTGGGGTGTTCTGTATGGAAAAGAACTTCTAAAACATTCGAAATATTTAAACGTGTTCTAAATCTGTTCTTTTTCTGTGCTTTTCCTCCCTCAG
Seq C2 exon
ATCAAAAAGAATGTGCTGTTGTCCCGGACAAAAGGCGAACCAACAAATTTCCAAATTTTAACATCAAGACCTGCGCTGGCTAGAACACACAACGAAGATTAGAATTTGGCGATAGTAGGCTTTAACCGAGGTGAATCTGAGCATCCTTCTGCATGATGTGTAGAATTCGATTGAACTACACTGTCATGTCAGACAGGACTGATTTTTTAACTCCCAAGCCAGTAGGATCAGTAGGAAAAAAAGTTGTTTTCATGTCTGACCGAACACCGTTTTGGCATGTTAGTAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052978:ENSDART00000149135:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (disopred):
C1=0.224 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCATCTGACTAGTCACA
R:
TCTACTAACATGCCAAAACGGTGT
Band lengths:
343-2053
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]