DreINT0094976 @ danRer10
Intron Retention
Gene
ENSDARG00000017229 | megf10
Description
multiple EGF-like-domains 10 [Source:ZFIN;Acc:ZDB-GENE-080506-1]
Coordinates
chr10:16170482-16172044:+
Coord C1 exon
chr10:16170482-16170645
Coord A exon
chr10:16170646-16171941
Coord C2 exon
chr10:16171942-16172044
Length
1296 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
CCCTACTTTGTTGGGTGCAGGAC
3' ss Score
7.77
Exon sequences
Seq C1 exon
GGTGGCATGGGGTGGACTGCTCAATTAACTGCCCCAGTGGAACGTGGGGTTTGGGCTGTAACCTGTCATGTGTGTGTGGTAATGGAGGCGCATGCAATGCTCTTGATGGCAAATGCACATGTACTCCAGGCTGGAGAGGAGACAGATGTGATCAACATTGTCAG
Seq A exon
GTCAGATCATCTGTAACATCATACATTTTTCAATCTGACCCTCATTGAGAAATAGAAAACCTTAGAATGCGAAAATAAGTTCAAATCATTTCAAAAGACTGCACAATATTTGGACTTAATAATTTAGAAATCACTGTAAAATATCAGTTAATTGACTGAAGACTCTGTGATTCATGGGTGTGTTACATAAGTTCATTATATTGTATTTGCAGATTAGCTCTGTATATACTGTATACACTTGCCAGCTGTACTGTCCAGCTTAACATTTTCTTATTTTGATTGAAATGTCATAATGTACACACTTTGTAAACCTGATTTGGAACAATGGTTATTGTGAAAAGGTGATATACAAATAAACCTGAATTGCACTCAATTGAATTGAATTTAAGTCTAAATCTTTACATTGTAACTGGAAGAGCAGAGATCATAGTGCCATAATGTAGTTTTAAAGTTAAGTGAAGTTTATTCATAAGCTAATTTCGAGAGGATCACGTGCTTATGATTTATCACGGCCGGTCCCGTATTTGCTAATCACTATCTTCCAATCATATGAGCCCTAAGCTACTATAAATAACCACAGTATCAGCTCATTTTATCTTCGTTTGGAAGAAACCCCCCTCCTCCCCTATTCTCCTCCTTTACCTCTGATTGGGCGGCACGGCGGCCCAGTGGTTAGCACTGCGAGCCCCACAGCAAGAACACTGCCGGCCCTGGTCCCTTAGGGCCGGTGGGTGTTTCTGTGAGGAGTTTGTATGTTCTCCCCATGTTCACGTGGGTTTCCCCCGGGTTCTTCGGTTTCCTCCCACCATCCAAAGACATTCAACATGTATAACAATCAAGCATTTGTCTAACCCCTCTGTTCCCTTAGCTACCGCAGTCGGGGAGTTCTGAGATCCACCGAGCTCAGTCTCCCCTCTTGCTCTGCCAACGGGAGGAAGCCCGGGCTCGAGGATCCCTTGAGCTCGGGGCTCTCTCCCGGGACAGCATGCCAAAAATGCTTTTATAAATCATCAGCTAAGTGTAAACTCTTGAAAGGAAAACGCCTGTGAATCACAAATTACGACTGTCAATTAATTTTTGCAATGTGGTAGTGTATTATATCCCAATTATTTTCTGTGTTTTTGACATTCACTCCTCATTTTATGATCATCTCATTACTTCAGCCTAATGAACATATTGATAATAATAATAGTTTGCCTAACCAGTTTCAAATGAATTAAAGTTTCTTTTAATATGCAATTAATTTGAATGTTTATTGTTCAAATCTTGTGAAAATCCCTACTTTGTTGGGTGCAG
Seq C2 exon
GACGGGACATATGGATTGGATTGCCGTGAGCGTTGTGACTGCAGTCATGCAGATGGGTGTCACCCCTCAACTGGACACTGCCGCTGTCTAGCAGGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017229:ENSDART00000043936:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=58.2)
A:
NA
C2:
PF126612=hEGF=PU(69.2=25.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGGGTGGACTGCTCAA
R:
TGTCCAGCCTGCTAGACAGC
Band lengths:
262-1558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]