GgaINT1017718 @ galGal4
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56241215-56244644:+
Coord C1 exon
chrZ:56241215-56241378
Coord A exon
chrZ:56241379-56244541
Coord C2 exon
chrZ:56244542-56244644
Length
3163 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
TTTTGTTTTCCTGGCCACAGGAC
3' ss Score
9.7
Exon sequences
Seq C1 exon
GTTGGCATGGTGTAGACTGTTCAATCAATTGTCCCAGCGGTACCTGGGGACTTGGCTGCAACTTAACTTGCCAGTGTCTTAACGGAGGGGCTTGCAATGCTCTAGATGGAACCTGTACCTGCGCTCCGGGCTGGAGAGGAGAGAAGTGTGAACTCCCTTGCCAG
Seq A exon
GTAGTTCAATCATTTTGATGAGTATGGCACTGTATTGATACTGGGCAAGGGGACACTACTGTAATTCTTATCACTTCATGGGAATAAATCCCCAACAAGCACTGCACCTAACAGTCATCCCGTGTTTGACTAGATTCAAGATTAGGGACATACACCAAAAAATCTTCTGGAAGAACTCTGCTGCACGGCACACTGAAGCACAGAGTAGGATGACTAGCATGATTAAAGTTGGTAAAGACCTCTAAGATCATCAAGTCCGGCAGTGATGACTGTCCAAGAAATGACTACACAAGACAAAGATGAACAGATGAACATTTTTTTTTTTTGCTTTCACACCTGAAAGTTTAACCTGAGACTTTTTCCATGCTCCTCTAGGATTTATTGAAAAACACAGTACCAACTTTTCTCTCTTTTTCAGCATAAAATGCCATCCAAACTGCTTCTATCAAACTACTTTAAGGAAAAACAATGACAGAGAAATGTAGCAAAGATATATTCCACATTTAGCAACATAATTTTAATTAAATTAGCCATATATGTGGTAAGGTATGAATGAAGAACTTCCTTTCTCAGTCAGGCAAGAGAAGGCATTCTTATCATGCAATCCCATGGCAGACTTTTGCCTTTATATTGGACTGTGGCTTCTATTATACCCCCAGACAGAAATCATTCTGTAGACAGACACGTGTATAATCAGTTCTGTTCTACACTGTAAGAACCCATAAAAATCCTTAATTTCAAAGCACAGAAAGATGGAAAATGCAAACAATTCGTTTTACTATTCAACTATTCTAACTACATTTCATAAACAAAGCAAAAATGATTTTTTGGTGAAAAAATGTATTTTTCCAGAGCCCATCTTTTCTAATGACAGATTTCAGTTTTCTTGGACATTTTAAACAACTATTAAACAACTATTATTATTATTATCAAGAAACCTCTCTCTGCTCTTCTTTTCCTGTCTTTGTCCTCCTTTCATTTCTGCAGTGTCATCTCCCTAGCAGGTTGGTGGCATAATGTAAAAGTAAAGGAATCACCTGAATTCAGTATGAACCATCTAAATTCCCTGCGCACATCATATTCAAGCTTCTGTCGGTTTGGATTACCTCTGTTTAGCAGTAACACAATAAAAGTAGCTGAACTACAGCATATGAGTGGAAGCCACACCTTTGTTTTGAACGAACTGCTCTCAGAGTGTTCTGAAAGAATTTTTTGGGAATGTTTTTTGGTTTGTTTTTAGAGGTAGCTTAGCATATGTTCGTTCTGATATAGTAAATAAAGTGACACACAAATTCTAAAATATTCTGGAAATCTGATTAGAGTGCTTCCTGTGTGTGTTTATGCAGCATTTCCAACAAATGCATCTCAATTAGAAGACTAATTTTTGTTTTTCTAAAGAAACTTTGCTTATCACTTAGTGTCTAATTCTGAAAGATGTTGGTAAGTATCTCCTAAGTTCCATTAGCTCTTCTAAAAGTGACTCCTTAAAAAAATACCAGTAGTTTCATCCCACTTACTCCACTGTTTCAAATATAGCAAGCAAGTGCTCAAAGGAAATTCCCAAGTTTACAATTCCCAACCAACTTACTGTCATGTACTCTCTCACTCTCCACCCACCTCCTTTTATTTCTGTGTCAAATACTGTCCAGAATCATTTCCATATGCAAATACATATCAGTGAATTTCATTTTTTTTTCATTAGATTTAGAAAATCAATACCACTGTTCAGATTGTTAATTAAGATTGACTTAAGTTTGGACAAAATACATAGCAGACTAGAATACCCTTTTTCAGCAATATAGTTCAGAATTTCCTTTATTTCCAAATCTGATAACATACAAAGGAAGTGCCTTCCTTAATCTTTTCTTTTTCTCTCTATAAAAATGGATTCTTGAGATAAGCAAAACACTCCTTATTCTCAAGTAATGCATGATTTTTTCTACTTCAGACTTGAAAGACTGGGAATGGAATATCTGTGTCCTGTGAAACTCTACAGAAAAAAAAAGAAAAAAAAAAAAAAGGAATACCAGATGAATTTTGATACGTTTTATTCCAGTTTTTAATGTAATTTGACCAATTTTTAACCTTGAATGTAAATGTCTGTCTTTCAAATCTGACATATCTTTTCTTTAGTTATTTCCTCTGGTGTGAATAGCCCCAGAAGTATTAAACTAAATTATCTTTCTGTTTTCCTTGGTTTTGATACTTTCTCTACGTTATCTATATGCTGATGTAGTTTTGCCTTCTTTTGAGAAAGCAATTGTAAAAATTTTATTCTTTTTCTTTTTTCTCAGATTGACCTTATATGAAATTATTGTCTAAAAGTATGTGCCACCTTCTACTGAAGAAACAGGAAGTAAAATTGATATATTCTGATATAATTCTATGAAAATCAGCTGTGTTCTTTTGGCACAGTTGAACATACTGAGAAGGTTATTTAACTTGTAATGTTAACCTTTTGATAACCTTATTTGTTGGTTCAAAAATGTTCAACAGCCAAAATATAATTTTGTGTAATGTGTAATAGCCCGAGAGCTTCTTTTCTAATATATTCTATGCTGATATGCAGAGGAAAACATTATGAAACAAAAGAAAGTGATACAGCATGCGTTATTTATGAAGTAAACTTTACACTAAACATGTATTTTAATACAATGGTTCACTCCTATTCAATTCTTTTTTTAGAAATTCTGGGTTTAAATGGCACCTTTTTTCATTTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTGACAAATACATGAAAATAAGATCTGAGGCAGGAAGGAAAGTGAATTAAATAATTAAATTAATATCACATCTCCAGGAATCCTGGGTTCTAGACAGGGGACTCAGCTGTAAGAGACATTAGTGGGACAAGTACAAGAAACTTTCATTGCTACCACTGATAGGTAGACTTCTGTTTTCTGAATATTTATCCAGATAGTTTAATTAATTCTTTATCTCCCCTACTCAAATAAAAGAATTAAAATGTAGAACATCAACATTTTCCAGAAGCCAGAAGCATTTTATATTAAGTAAGCTGATTACAGGCTTAGAAGAGATCTGAGGTTTCCTTTTTTCTGAGGCAGGACTGACCAGAACTTGTTCTCGTCTAACTCTCAGTTCTCATCATCTCTGTTTTGTTTTGTTTTCCTGGCCACAG
Seq C2 exon
GACGGTACATATGGCATGGATTGTGCTGAGCGCTGTGACTGCAGCCATGCAGATGGTTGTCATCCTACCACGGGTTACTGTCGCTGTCTACCAGGATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126612=hEGF=PU(69.2=25.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]