RnoINT0091310 @ rn6
Intron Retention
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52327556-52330159:+
Coord C1 exon
chr18:52327556-52327719
Coord A exon
chr18:52327720-52330056
Coord C2 exon
chr18:52330057-52330159
Length
2337 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TAATGTCCTCTTCCTCACAGGAT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GCTGGCACGGGGTGGACTGTTCCATCAGCTGCCCCAGTGGCACATGGGGCTTTGGCTGTAATCTAACCTGTCAGTGCCTCAATGGCGGTGCCTGCAACACACTGGACGGCACCTGCACCTGTGCGCCGGGATGGCGAGGGGAGAAATGTGAATTTCCCTGCCAG
Seq A exon
GTATGTGTGCTCTGGGTAGCCATGCCTGGAGGACTATGCAGGAGGGATGGCTTCTTTGTATAGTTTTTTCCCCTCCTGACTGAAGGTGAATGGGTATGACTCGATCTTCAGTAACTATTACAAGACTCGAAATAGACAGAGGCTTAGAAAGGGATCGAGTGGAGATCAGCTAGGCATGTCTTAAAGAATATCTCCTTCTCTCCTTTTGTCCCTCTGCTGATCTCCCAGCCCCCTTGTGCAGCATTTTCTGGTTCTTACACACTCCTGTCTTGGTGGCAGCAGGACAGCAGCACTGGTCAAACACCCAGTGTATGCCTGTCAACTCTCCAAGTATTTTGTTTCCATTATAATGGAAATCTGCAGGCTTTGGGGTGGGAAGTGACAGGGGGTTGAAAAGGGGGCGGTGGCTGGTGTCACAGAAATGTGCACTGGAGTGATGAAAGCAGGTTTGGAAACAGCCTTGGCTAATGTAAATATTTCTGGAGGCACGGGAGTCTCCTCGGTGCGAACTCCCTTCCCTTGACCTAATTTGGAGACGTGCATCATTAGAGGCATCTCCCTCCATAGCTGCTGCGAGGCTGGCTGACAGTGAAATAGGGAGCTCTGTCGTAACCTGTTGCGTGCCTGCTTTCCAGAGCACTTGACTGGCTTCTTTTCCTGTTTGCATCCTGCTTTCTTCTTGAGCCATCAAGCATCCTAGCAGCAGTGATGTGTTCTCTGCCCCTGGGGACATCATCAGATGACAATGTGACCCCACCCCACCCCCACCCCTGAGTTGGGCCATTTCAGAGACTGGACTTCCACCAAACCTTTTTCCTCCTCTGGGCCTCCTCTTGTTAAGTACAACCCATTTTCTAAAGGAGAAAGGATTCCTGACCTGCATTATTCTGTGCTCCCCAAGCCCCCAGGAGTTAAGCGAGCTTTGCTGTGTCTGTTCAGAGCAGTGAACCTATTATCTATGCCTGGAGGCATAGTTAGGTTGCCTTTTACTCTCTCATTACAGACAAAGTGGAAACCCCAGTGTAAGCTGCCCATCGTTTTGTAGTAGATGTATTAGTGAGTCTGATAGTTCAGGGGCTTCTGTTACAACAGAGCTAACCGCTGTGCAATCCTGTCCAACATTAGTGGAGCCTAATAAGTGGTCTAGTTGGTTTCTTTGCTTAATAAATCATTTGCCTAGGCAAATGATTACATCATCGAACACCCGCTGCCTGGTAATGCTGTTTCCCTGTTCCCACCCTCAGTGACTGGGCTGTTTTCCTCATTGTTTGGGTGATACAGAGACGTTTGTAGTACCCTACACCAGTCCCAAGGATCTGGGGTGAAAAATAAGATTTCCCTCCAAATAGAAACATTTCCATTTCTTTCTCATGAATCATGCCCATCGCCCAAGAGTTTACCCTTCATTGGGCTACTCACCAGTAGCATGTGCTTGGAGGGGTGAATGAGGAGGCTGCCGATGGAGTGTGCATTTACAGCTCTGAATCATAATGTTCTCCACAATTTAACCTCTTTCTGGAAAAAGAAGCAGTGTATTAAAGAAAATTATAACAGATTTTCATCTTTCTTTACTATGTCATGTATTCCACTGACAACTTAGAGAAATGAACTTAATTCAGATAAATATATGTATATATACACATATATTTATGTATATATTTGTATATATACACATATATGTATATATTAATATGTATATATACAAACACACAGGCACACACTAAATAGATTAGATCGATAAGTACAATAGTAAGTAAATAGGTAAATATAGATGTTATTACAGTAAACATAGCATACTAATAATCCAGTAATAAAATGTATAGATCGATATGTTACTATTTTACTATGTTTCTATGTAACATAGATGTACTATAGTAACATCTATGTATCTATGGACTTACCATCTATCTAATATGTCTAGCCAGTGTGTACCTGAATGTTTTGGACAAAGACCTCTTTCTCCTCTAAGGAAGACAATAATAGGAAAGACTAAACTATGTTTTAATAATAATTAGAGATAAATGAACATTTTTTTATGAGTTGTGCTAATGATAAGAAAAGGCTCTCAGTCAACTGGCATGCTTATATATTGTATATATGCATATGTATGTGTTGGCCTGAGTGGTTTCACCATGCAAATCCCCCGACTATTCTTATCAGAGATAAGCTAGAGTTGAAGCGGTTTTAAACTGCTACCTTCTCAGGCTTGCATTTTGCATCATGGGGAGGGGTGGTGTGATGGCATGTTCCTAAGACACATGTCAGAGCCCTTGCTGTTTGCCGTCAAGTGAATACCTAGGCTTGTCATTGCTGGTTTTAATGTCCTCTTCCTCACAG
Seq C2 exon
GATGGCACATATGGGCTGAACTGTGCTGAGCGCTGTGACTGCAGCCATGCAGACGGATGTCACCCCACTACCGGCCATTGCCGATGCCTCCCTGGATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674:ENSRNOT00000037901:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126612=hEGF=PU(69.2=25.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]