MmuINT0097608 @ mm9
Intron Retention
Gene
ENSMUSG00000024593 | Megf10
Description
multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
Coordinates
chr18:57421648-57424197:+
Coord C1 exon
chr18:57421648-57421811
Coord A exon
chr18:57421812-57424094
Coord C2 exon
chr18:57424095-57424197
Length
2283 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGATGTTCTCTTCCTTGCAGGAT
3' ss Score
12.24
Exon sequences
Seq C1 exon
GCTGGCACGGGGTGGACTGTTCCATCCGCTGCCCCAGTGGCACATGGGGCTTTGGCTGTAACCTAACGTGTCAGTGCCTCAATGGCGGTGCCTGCAACACGCTGGATGGGACCTGCACCTGTGCGCCCGGATGGCGAGGCGCGAAGTGTGAATTTCCCTGCCAG
Seq A exon
GTATGTGTGTTATGCCTGGGTAGCCATGCCTGGAAGACTATGCCGGAGGGATGACTTCTTTGTATAGCTTGCTTTTTTTTTTTTTTTTTTCCTGACTGAAGGTGAATGAGTGTGACTCAGTCTTCAGTAACTATTAACAGGATTCGAAGTAGACAGAGGCTTGGAAAGGGATTGAGGGGAAATCAGCTAGGCAGGCTTTAAAGAATATCTCATTCTCTCCTATTGTCCCTCTGCTGATCTCCCAGCCCCCAATCCAGCATTTTCTTTGGTGGCAGCCAGGCAGCAGCACTGGTCAAACACCCAGTGTCTGCCTGTCAGCTCTCCAAGTATTTTGTTTCCATTATAATGGAAATCTGCAGGCTTTGGGGTGGGGGAGTGACAGGGGCTTGAAAAGGGAGCTGTGGCTGGTGTCACAGAAATGTGCACTGGAATGATGAAAGCAGGTCTGGAAACAGCCTTGGCTAATGTAAATATTTCTGGAGGCACAGGAGTCTCCTCGGTGCACACTCCCTTCCCTCGACCTAATTTGGAGACATGCATCCTTAGAACGCATCCTCCTCCATAGCTGCTGCAGGCTAGCTGATAGTGAATTGGGGAGTTCTGTGGTAACCTGTTGCATGCCTGCCTTCCAAAGCACTCGACTGACTTCCTGTTAGCATGACACTTTCTTCTTGAGCCATCAAGCATCTTAGGAGCAGTTCTTTTACCCCGGGGACATCATCAGATGATAATGTGACCCACACTGAATTGGGCCATTTCAGAGACAGGGCTTTCACCAGACCTCCTTTTCTTCCTCTGGGTCTCCTCTTGTTAAGTACAACCCATTTTCTAAAAGAAAGGATTCCTGCCCTGCATTATTCTGTGCTCCCTAAGCCCCCAGGAGTTAAGCTAGCTTTGCTGTGTCTGTCCAGACCAGTGAACCAATTAGCAATGCCTGGAGCTGGTCGTCTCTTACTTCCTCATTATAGACAGAGTGGAAACCCGTGTACGCTGCCCATTGTTTTGCATTTGATGTATTGGTAAATCCGGGGAGTCTGATGGCTCAGGGGCTTCTGTTATAGCAGAGCTAACTGCTGTGCAATCCTGTCGGACATTAGTGGAGCCTAATAAGTAGTTTAGTTGGTTTCTTTGCTTAATAAATTCTAGGCAAGTGATTACATCATCTAACACCCGCTGCCTGGTACTGCTGTTTCCATGTCCCCACCCCCAGTCGCTGGGCTGTTTTCCTCATTGTTTGGGTGATACACCCTACACCAGTCCCAAGGATCTAGGGTATCAAATAAGATTTCCCTCCAAATAGAAGCATTTCCATTTCTTCCTCATGAGTCTTGCCAGTCACTCCAGAGTCTCCTCTTCATTGGACAACTCAACAGTCGAATGTACTTGGAGGGGTGGATGAGGAGACTGCCAAAGGAATGTGCATTTACAGTTCTGAATCATAATGTTCTACACAGTTCAGCCTCTTTCTGAGAAAAGAAGCTATGTAGTAAAGAAAATAACAATAGATTTTTCAGTTTTCTTTATTATGTCATGTATTCCACTGACAACAGATCAAATCAATATATATATACATATACACATATACATATATATACACATATGTGTATGTTTATGTATACATATATTTATATATGTATATATATACAAACATACACTCAGGCACTAGATAGATTAGACAGATAAGTTCATAGTAAATACTTAGATACATACTATAGTAACACCTATATGTTACTATATTACTATGTTTCTATGTAACTATGTTACTATGTTGCTATAATAACATCTGTGTATCTATGTACTTACCATCTATCTATCTACTGTGTACATGTATGTTTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATCTTTTTTAGGTGGACAAAAACTTCTTTCTCCTCCAAGGAAGACAATTATAGGGAAGTCTGAACTATGTTGTGAGAATAATTAGAGACAAGTGAACATTTTTTATGAGTTGTGGTAATGATAAGAAAAAGGCTCTCTCAGTCAACTGGCATGCTTATGCTTATTGTATGTATGCATATGTATATGAGTGGTTTAACCATGCAAATCTCCCAACTATTGTATCAGGGCTAAGCTAGAGTTGAAGTGACATTAACATGCTACCTCCTCAGGCTTGCATTTTGCATCATGGGGAAAGGTGGTGTGATGTATGTTCCTAAGAAGCATGTCAGGGCCTTGCTTGTTGTCATGTGAATACCTAGGTTTGTCATTGCTGGCTTTGATGTTCTCTTCCTTGCAG
Seq C2 exon
GATGGCACTTATGGGCTGAACTGTGCCGAGCGCTGTGACTGCAGCCATGCAGATGGCTGTCACCCCACTACAGGCCATTGCCGCTGCCTCCCTGGATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024593-Megf10:NM_001001979:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(46.2=10.9),PF079748=EGF_2=WD(100=72.7)
A:
NA
C2:
PF126612=hEGF=PU(69.2=25.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: