DreINT0095411 @ danRer10
Intron Retention
Gene
ENSDARG00000068893 | mettl5
Description
methyltransferase like 5 [Source:ZFIN;Acc:ZDB-GENE-041010-21]
Coordinates
chr9:48431742-48433937:+
Coord C1 exon
chr9:48431742-48431793
Coord A exon
chr9:48431794-48433887
Coord C2 exon
chr9:48433888-48433937
Length
2094 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GTGTGTGTTTTCCCTCACAGAGC
3' ss Score
11.99
Exon sequences
Seq C1 exon
CACATTCAGAAGAAAGCAAATGACTGGAAAGTGAAAATGGAAGTCATCGCAG
Seq A exon
GTAAAAACTTTGTGAATCCATAAACACACTCTACTGGTCAAAAGTGTGAGTTTGGAAAGATGTATGGGCTGCTTTTATTAATCAATCCTGAATTGGATCAAAATATAAAAGATTTGAAATCATTATTTTTAGAACTTCATTTGTTGTGAAATCCTAATTGTTTTAAAAGGTTTTTTTTTTCACAATAACATAATATTATGCAGCTCAACAGTTTTCAGCATTGATAAAAAAAATTTTTTACCTTGACTATCAACCGCTCAAGAAAAAAAATATCTTCAATGCTGACAGTCAACAGTTGAGCTGCATATTACATTATTGTGAAAACTTTAAGGGCGACACAGTGGCTCAGTGGTTAGCACTGTGGCCACACAGCAAGAAGGTCACTGCTTAGAGTCTCGGCTGGGTCAGTTGGCATTTCTGTGTGGAGTTAACAAGTTCTCTTAGCACAAACAAGATACTTTATATACAACTAGCACTTCTTGTGTGTATTGCCTCTTCGTGTTGAATCGCTGAATGCCTCCTCAATAGTGATGCTGGGTTCACACTAGACGTGGATGAAGCGTTAAGCATGAGTGATTTACATGTTAAGTCAATGCAAAGACATCTTGCGGCACTATACGCTCGAATTATGTGATTTGCGTGAATGAAGTAGCGTGAATTTAACGTTTAACGCCAGAATCGGTCAAGTTGGAAAATCTGAATTTCAGCAGACACTCGCACTGTGTTAACCAATCAAGAGCTTTCTCTTGTAGGGGAGTGATTATGACGTAACACCTGTTGTTGGTGTGCCAAGGGGAAAATCCTCCTGCCAACACGGGACAACAGTTCATCAAACTGGGCTCGGCCCAGTCAGAACCACCGCTGAAAACTTACATCATCCAGGTACAGCTTCTGGAGGAGTTTATGAACTCACAGAGCTGGGTGCACCTCAGAATGGATCTAGTGGACTCAGTACACATACAGTTTTTCAGTCTTCATAAAGCACATAAACAGCTATTCTCTCAATAAAATCCATGTTAGCCATTTAGCAATGAAGCTAGAGTCACCGCAGGCAGACAGAAGCCCTGCCCCTGATGTGAATCTGCGTCTATTGTGAAGTGAATTTGGCGTGCGAATGAAGCGAGTAAACTCGAAATGTTCAGGCGTCTATTTGTGCGATTTATTCGCACGTTCCGCATCTGGTGTGAACACAACATAAGTTGCTTTGGACAAAAGCGTCTGCTTAATGAGTAAATATAAATGGGTATTATATTCTTATTCGTTCCATTCCATCTGTAACCGTATGTTCACACTGCAAGCGATGAGAGCGTCAATGTAGCCAGAAGTCATTTATTTTCAATGAGGGCTGGCGGCGAGGAGCAGCGCGGCGCATCTTCACTGGTGTGGGCGTCGAGGAGAGTTGAAATCAAGTCAACTTTATGGTAATGAGCTATGATGAGGTTTGGTGGCAAGCAGTCAGAATGAAGAAGTCCATTGCTTGAGAGGAGTTCAGAGAACACAGACCTGTGAACTTTGGCTCAAAGTTGTTCCCAAGATTTTGATTATTGCTGTTGCCAGATTTCTAATTATTTACAATGTTTTCTTATGCAATAAATAAGTTACAAATGTGCATTAATGTTATATACTTATCTTTAAAAAAGCGTGAATCTCATGCAACAATACAAAACAGTATTGCTGCTCTAGGATATTTCAGACATATGGACACATTGGATAATTAAGTGGAGCAAAACCACACCACAGGCAACTTTCATTAACAATCTTCCATTGTTAAATAAATTTAATAAGAAGTGCGCAACATTTTCACACTAGAAAGCATGTTTTATGCAGGAATGTAACTGATATGCTTCAATGGCCCCTTTAAATACGAGATCAATGTAGCGAATTTTGATGCTCTTGCCGCTGGAGCTGAAGGCAGACAGCGTTGTCGTCAGGGTGGCCAGATCGACCTGGGACGCTCTCAACGCTTTCGGTGTGAACGCACAGTAAAGCATTATGATGTAATTAATGTAGGATAGTGTGATATATTCTTATTAATTTCCTTCTAGACTATAAAGCATTATGACATGTTATAAATGTGTGTGTTTTCCCTCACAG
Seq C2 exon
AGCTTAGATACGACTTGCCGGCATCATATAAGTTCCACAAAAAGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068893:ENSDART00000099794:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]