GgaINT1017784 @ galGal4
Intron Retention
Gene
ENSGALG00000009676 | METTL5
Description
methyltransferase like 5 [Source:HGNC Symbol;Acc:HGNC:25006]
Coordinates
chr7:18073827-18074620:+
Coord C1 exon
chr7:18073827-18073878
Coord A exon
chr7:18073879-18074570
Coord C2 exon
chr7:18074571-18074620
Length
692 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTTTTATACTGTTCACAGAAC
3' ss Score
7.89
Exon sequences
Seq C1 exon
CATGTTCAAAAGAAAGCAGATGAATGGAAAGTGAAGATGGAAGTCATAGCAG
Seq A exon
GTAAGATTAATTTCGTGTTACAGATATTTTCTTGGGGGCTAACAGCTGTAAGACAATACAAACTTAACATCTAGAGGGAAGTTTAAGTATGATTTAAGACTAAAAATGACACAAGTGTTTTTTAACCTTTTATTTAAAAAAAAAGAAAAAAAAATCTTGCTACCTGCCTGGAACACAAGTAGGCACTCGATAAAACTCAGAAAAATACATATTTTGTGTAGAATTTGATTTCTTCCTGGACTAGCTTTTGTCTTCAGGCAGAGGTTACTCATCTTCCTGCTTCAGAAGGAATAACAAAACCAAAGGTCAGTTCTTAAATGAGAAAGCATCCTGCCATTGCAGTCAATCAAGTATTTTGGGCAGTTCAGTTATTTTCCTGATTCTTAACTATCATGAGCTATGTGGTTTATAGTCATACAACTTACTTAAGACATGGAAGTTGCCTAAGTGCTTAAGATACATTTTTGCTGCTCAGCTGTCCACTTACGTCTGATATAGGCAGTTCAAATTTTCACTCCTAATTAGTGAAGAAATCTAGCATAGAGGTCAAAACTATTATCCAGTCAAGGCTCAGAGGTGGGCAATAGAAGAAACAAAACTTAGATGTAGGATATAAGTTAATAAGCTTACAACAATTTGCTTACAATAATCATTGTAGAGTAACAGTGTCATTTTTTTTATACTGTTCACAG
Seq C2 exon
AACTTAGGTATGACCTACCAGCATCATACAAGTTCCATAAGAAGAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009676:ENSGALT00000015749:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(11.4=100)
A:
NA
C2:
PF051759=MTS=PD(2.0=17.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]