RnoINT0091795 @ rn6
Intron Retention
Gene
ENSRNOG00000008469 | Mettl5
Description
methyltransferase like 5 [Source:RGD Symbol;Acc:1566062]
Coordinates
chr3:56102290-56104198:-
Coord C1 exon
chr3:56104147-56104198
Coord A exon
chr3:56102340-56104146
Coord C2 exon
chr3:56102290-56102339
Length
1807 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTGTTTGACTTGTTTCACAGAGC
3' ss Score
8.66
Exon sequences
Seq C1 exon
CATATTCAGAAGAAAGCTGCCGAGTGGAAAGTGAAGACAGAGATTATCGCAG
Seq A exon
GTAAGCTAAAGGTCAGCCCTAAGAGGCTCTTTAGCAGGCCAGCAGGCCAGCCTACATTTTTAAAGTTCTGAAGAAAAAATCTATCAGGTCTGGTAGTTAGTTGGAAAGACAATAAAAACAGGGTAAACATTTACCAAGGTCTGCCTGCATCCCTATTTATGTGTTTTATTTTCTTTCTTTTTTGGATCGGGGTGGTGTTGAGAGACAGGGTTTCTCTGTGTACTAGCCTTGGCTATATTAGAACCTACTTCATAGACCAGGCTGGCCTCAAACTGACATCTGCCTTTGCCTCCCAGTGATAGGATTCAAGGTGTGTGCCACTCTCCAACCCTGCATTTTCTTTAAAAAAAAAAAAAAAAAAGTAATGGTGGGGCTAGTGAGCTAGTTCAGGAATTAAGACCCCTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATATGGTACTCTTTTGGCAGTAAATGTATATGCAGACACTGTACTCATATATTAGAAGTAACAACCAAATGCAGCAATACCTAGGTAATTGGTCATCCCAAGCTTATAGAATACTATCCCCAGTAAGTGAAAACATGGTAGGACTGGTGTGAAATTCACTATTTGAAAATGCCACCAATTTATGCCTGATATACAGAGCCTTTTTCTTTTTTGGTGAGAGACAAGAATATAAACCACACACTGTAATTATAGAAATGCCCCTTTTCTTCCTTTTTACTAAATTAAATTTGCCAGTATCATAACTTGAAAAATGTTGGAAGGTAGAGATCATCTGCTAAGTCTGAGAAGTTTGAAATAAATCGTACAATAAAGACTGGGGATGTGGTAGTATGCTTAGTCTGCCTAACGCCTCGGGATTAGTCTCTACCATGAGAGATGGGGAAAAAAATGTGCAGTGAATGGCATTTTTGTTTTGTTTGTTTTGAGGTATGGTCTCTCTGTGTAGCTCTGGTTATCCTTGAATTCACTATGTACCAAGCCTTGAACTCAAGAGATCCTGCCCGCCTTTGCTTCAAGAATCCTGGGATTCAAGGCACTGCACTGCCATTCTATTTTTTACATGATAAGTTTACCATGAATTTGTCCTGTGGTGTTAAAACATTTGTTCATAAAGACCTGTCTTCCTACTGTATAAGTGTTGTCAGCTCTTACATAATTTCTGTAACAGAAATCAATACACAGCCAATAGCATACTAACAGTCTAATAATACACTAATAAAGAATATTTGGCATTCCACAAGTAGTCATCAGACCACTAGCTTTAACTGGAACCTAAAAAGAGAATTATAGTCTCCGTTCAGACCTACTGAATTAGCCTGCAGTTCAACAAAATTGCCAGAGAACCTGATCACACATTATAATGAAGTTATCCCCTACAGGATTAGAATTATGTTGGAAGGTATGAAAGACAGTGAAGTATAGAGGATTTGTTATAAATTAGAAAGGAATGTGAAAAATGGTCTTTCATTTTGATAGTGGAGAACTACCATTAAATTTTGAAATAAACATGGATATTTTAATCACCTATAGATTAAAATATTCTTTCCATAGAACTTATTTTTCACTTGTTAATCCTTTTTTTTTTGGAGCTGAGGACCAAACCCAGGGCCTTGCGCTTTCTAGGCAAGCACTCTACCACTGAGCTAACTACTATTCTCCATAACCTCAAATTTTGGTGTAAATTATCAAAACATCAGAAACACCATGTCCAATTAGACAAATCGGTTTTTGAGGATATGTCCAAAGTGAGAAATATAGAATGCTATGCATACCAGCATTTACTATCTTAACTGTGAGTGTTTGACTTGTTTCACAG
Seq C2 exon
AGCTTCGATATGACCTACCAGCATTATACAACTTTCATAAAAAGAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008469:ENSRNOT00000011303:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]