DreINT0098426 @ danRer10
Intron Retention
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10826785-10827052:-
Coord C1 exon
chr2:10826994-10827052
Coord A exon
chr2:10826893-10826993
Coord C2 exon
chr2:10826785-10826892
Length
101 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCACCCTCTGCATATTGTAGTGC
3' ss Score
6.04
Exon sequences
Seq C1 exon
AATGATGAAAAGTTTCCAACTATAGATAATAACTCACTAGACCTGATGGCCTCAAAAAG
Seq A exon
GTGAGGGAGATCAACACAACATGCATATTGTGCTTTTTGAAGTGAGAGCCAATTATAATTGTGATTTGTTTGTGTTTTTTGTCACCCTCTGCATATTGTAG
Seq C2 exon
TGCCAAAAGTGAAACATTTTTGCCTTCATCAAGTACCTCAGATGTTGAATCGGTTGGAGCCACCAGCACCAGTGAAACTACCTCAACCACCCTCTCAAGGCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590:ENSDART00000122709:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTCACTAGACCTGATGGCCT
R:
CTGGACTGCCTTGAGAGGGT
Band lengths:
138-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]