MmuINT0101692 @ mm9
Intron Retention
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108533285-108533549:+
Coord C1 exon
chr5:108533285-108533337
Coord A exon
chr5:108533338-108533444
Coord C2 exon
chr5:108533445-108533549
Length
107 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
TTTAAATTCTTTTGTCTCAGGAG
3' ss Score
7.24
Exon sequences
Seq C1 exon
GATAAGGAATCAGTTTCAGAGAATCCTACGTTGGATTTACCTTGTTCTATAGG
Seq A exon
GTAAATAGTTAATTTTCTTCTTTCCTCGGAAATTTCTTTGTGAAGGAATTAGTATCTCTATTGTTATGTAATATAGTTGTTATACCATTTAAATTCTTTTGTCTCAG
Seq C2 exon
GAGAACTGAGGGAATTGCACATTCATCCAATACCTCAGATGTGGACCTCACGGGTGCTTCCAGTGCAAACGAAACTACCTCGGCTAGCATTTCCAGGCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-Mtf2:NM_013827:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATCAGTTTCAGAGAATCCTACG
R:
CCACAATGCCTGGAAATGCTAG
Band lengths:
154-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: